RNA id: AMCG00021871


Basic Information

Item Value
RNA id AMCG00021871
length 2781
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00021871
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34820340 ~ 34824676 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCGCGTAATCAATACGTCACTACGTCCGCCTCTTTGAGGCATAAGATAGATACACCACAAAATAACAACAGGAAGAAGACCCAACTTTTAAAACGAAGCGGGATTTGGactagtagtagtatatattcatatttaagCTTCAAGAGTTGGGTCTGAGAAGGAGAAGGGAACCATGAAGAGAGGAAAGGTGTTTGCACCAGAACCAGACGAGTGTGGAATCTGGTTGGACACGGCAGagctgaaggagaagaagaaaaagCCAAAGCGGATTTGTCCCATTACCCAGTTGTTAAACCCCTTGGCAGGAGGTGGCTACAGCATTCAAGTGGCTCttaatttcacacaaaataaacacccCTTGCCTATTACTAAACAAACCACAATCTCTTCATTCTTCACTGCAAAGTGCACAGACAGTAAAAACAACAAGTCTCAAGATGCAGACTCGGATGATTCCGATTTCAAGTCTTTGCCATCATCTCAATCTGGTTGGACTGGAAGGAAACGGAAATACTGCTCAGACAGAAATGACATCAATCTCTCCATTGGCTCTGTGGATACAGGGGAAACCAGCATCTCTGTTCTGAGCACACCACAGATGGAAGATAATGACTGCCTGAAGCAAGAGAAGTACAGTCAACGTCTTAGGTGTGACCGTGACAGCAGTTTATCTAATGATGACACTTTGCACACAAAGATTACTGGGAGACTTCTGCTCAGTATGGGTGACAGTTCAGAGCTTCTTGGATGGAGGAATGGTCAACCTGTGATCAACACAGCATTGGATGCTGTGGACTGCACAGCTTCAGAGGCGTCTGAGGAACACATGTTTTCTTTCCAAGATGGATTTGCTGAAGCTGGTGAAATTTCAACAGAGACTGGGGAGGCCAGTTTGACTCGGTGTACCTTTACCCAGGATTCTCAGGGAAACCGAGTCATCGCACACCGAACTCCACAGCCAGCTGTTCCCAAGAAGCCAATCCTGGATAATGAAGGAAGTCAACTCTGGCTGActggagacacagagagcttgAGCACAGAGAGGTTTTTCCATACTTTACTGAGGCAGGGGGGTTACACATCCACACAGAAGAGAATTGACTGCTTCAAGTCTCAAAAAACACCCCAGCCTGTCAATAGCACATTTAATGAGTCTCAGGAGATCCGGGGGGATTTTGGTGCAGACAAGGAGAACAAGTGCTCATCTGATCCTCTCATAACCTGGAAACGCAGGGGCTCTGTTCTGGGACAGTCGCCTCTGAAAGGCACACAGCAGGACAAGGGGCTGTGGTCATCACCCAAAAGAGCTCGGGTGCAGAAGACTCTGGCCAATACTCAGGCATTGCTCTTTACTCAGGACACCCAGGGAAACAGAGTAATAGCCCATCGTAGAAGCCAGGGCTGGACATGCAGAAGCCCCCTAAAAGACCAGACCAATTGGTCCCAGTCTAGGAACTGGGACAGTCCAATAAAGAGCCCTATATCTCATACATCCTTACATGAGGTCAATCAGAGCAACCTGGACTTTGATTTGGAGCCAGACTTGCTTTTTACACAGGACTCTGAGGGGAACACGGTGATTAAACACCAATAACCTTTGCACAAAAAGATACCCATACCCTGGATTCTTACTCCTCAAAACTGTCTGAGAGGGTTCTTATAAATATAGCAtcaaaattgatttattaaaatataatgcatacacTTGCTgttcttttagtttttcacatccacaaaacaaaatctgtaaatcTTGATGTTATTTAGGAATACCTCATCAACATTGCTTAatttttctgaatgtttttttttttgtttttttttttaatattttactgatTTGTGTCTACTCAAATGTGATTTGCTGAAGACCACATAAAAAACATAGAATCAAGGCCCATAATAAGAACTGGCTTTGAAGGGAGTTCATTACACAAGACCAGTGTGTTCAGTGCATTCCTTATACTAGGAGTCTGAGATACCCTGGCTCCCCTTTCCCTTAATAAAGAACATAAAGCACAATTATTTGTTGCCACAGAGGGCACTTGCTTGTCAAATATTGGTTTGCCAGCATTGTGTATTGAAGTGCTGGGGAgttaaaaacaaagccaaaactTCAATATAGATTTTCAGATAGCAAATGAAGCCCTGagattgttttgtaattattatttagtttaatgtGAAATTGTACTACCTCAAAGCAAAGCATATCCAGTGAACCAGTTTTTGAATGCCCTATAACTTTGCCAGGTCCAAAATTACTAATGTCTAAATGTCTAATGTATAGTtactatttgtatttcattcatttgcAGATTCTTAGAGTCAGCAGATTCTATAATACCTCACAATATGCCACTATAGCTGTGGTTCTAGCACATTATATTTTGAGTGTGGTTAAACCTGACAACCAAGACTTGCAGTTTTGACCCATATACTGTTAAATCCATCAAAAGCCAATGTTATGACCTACACCAGTCAATTGTAATACCCCTCTCAAAAAACTGGGTTTTGATGTCAAAGTCTAAAGTATGTTAATTTTccattattgctcttcattagtataaattacttttaagaCCCTGAGATACAGTTAAATGGTTAAAAGAAACTGTTTGGATTTATGATTGTggatgtataattatatttgatgTTTTCTGGTTTTGGCACTGAAAAATGCCTACTGTCTTTTCGTGTAATTTGTGATTGTAAAACTGATACTGTACTTTTTCCACCATTACGTTTCCTCATTAAATGTACACTAACAATAAAAAA

Function

GO: NA

KEGG:

id description
K16800 AUNIP, AIBP; aurora kinase A and ninein-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111048 lncRNA upstream 400283 34419791 ~ 34420057 (+) True G89010
TU111044 lncRNA upstream 432668 34387254 ~ 34387672 (+) True G89006
TU111010 lncRNA upstream 434138 34383959 ~ 34386202 (+) True G88981
TU111009 lncRNA upstream 446675 34369970 ~ 34373665 (+) False G88980
TU111008 lncRNA upstream 448160 34369970 ~ 34372180 (+) True G88980
TU111320 lncRNA downstream 582034 35406710 ~ 35406984 (+) True G89222
TU111386 lncRNA downstream 1036240 35860916 ~ 36195602 (+) True G89280
TU111391 lncRNA downstream 1067487 35892163 ~ 35893862 (+) True G89283
TU111393 lncRNA downstream 1075967 35900643 ~ 35901176 (+) True G89285
TU111411 lncRNA downstream 1139082 35963758 ~ 35970466 (+) True G89298
AMCG00021872 mRNA upstream 83997 34718666 ~ 34736343 (+) True AMCG00021872
AMCG00021874 mRNA upstream 104173 34699848 ~ 34716167 (+) True AMCG00021874
AMCG00021875 mRNA upstream 129673 34685015 ~ 34690667 (+) True AMCG00021875
AMCG00021873 mRNA upstream 141584 34625048 ~ 34678756 (+) True AMCG00021873
AMCG00021876 mRNA upstream 212719 34596916 ~ 34607621 (+) True AMCG00021876
AMCG00021883 mRNA downstream 156901 34981577 ~ 34983088 (+) True AMCG00021883
AMCG00021881 mRNA downstream 204194 35028870 ~ 35077090 (+) True AMCG00021881
AMCG00021882 mRNA downstream 252425 35077101 ~ 35086504 (+) True AMCG00021882
AMCG00021880 mRNA downstream 283939 35108615 ~ 35175768 (+) True AMCG00021880
AMCG00021884 mRNA downstream 375569 35200245 ~ 35218131 (+) True AMCG00021884
TU110433 other upstream 4426119 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 4426119 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 5438067 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 5438067 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 5755001 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 101877 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 213163 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 386457 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 1139895 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 1139895 35964571 ~ 35967384 (+) True G89299

Expression Profile