RNA id: AMCG00021873


Basic Information

Item Value
RNA id AMCG00021873
length 7477
RNA type mRNA
GC content 0.44
exon number 16
gene id AMCG00021873
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34625048 ~ 34678756 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGTTTCACCAGTTCCTGTGATAGACAACGTAGAACCAGCTGATAGCGCATGCTCGCCTTGTAAATACGTAGTCAGCTTCATCCCAACTTCTACAGAAGAGATGACTCCAGAGGCCACTCCGGCAAAGAGCCCACTGACCTCGGCCACTGTCACCCCTGACTGCCCCGAATCATCTTACCTCTCTGTCTCACCACAACCCTCCATCCTCGCCTCATTGTTAGCCAGCCGGAAGTCACCCATCAACCCAACCACCACCCCACCCAGATCCTGTTCCCAGGGTTCTTCGGCAAACATCACCCCAGCTGTGTCTCCGACAATAGAGAAGCTGCCCTACCTCCCTCATTCCCCATTCCATCTCTTCTCATATGACTTTGATGAGCCACCTCCTTCAGTGGCTAAAGACACAGAGACTGAAGCAATGCAGTGCCTCAGGCCGGCTCTTGGGGGATTGCTGACCTCTTCCTACCGACAGCACCAGGAATCACTGGCAGCCGAACGAGAGCGGCGGcgacaggagagagaggagaggttaCTGCGGATAGAACGCGAGGAGAGGAACAGATTCAATCGGGACTATGTGGATAAAAGGGAAGAACAGAGACATGCCAGAGAGGAAAGGTACAAACACGTGGAGAGGGTCGCCGCAGAGGAGTACGAGAAGGAGCGGACCCGGGTGCCACCGCGGGGGCGCAGCGAGCTCACCCTCAGCCTGAGCCCGCACTCCTCGTCGCCTGTGCCCAGGTGCGCCACCCCGTCCTCTGCCGAGCCCCAGGAGGAGCCCGAGACCCCGGCCACACCCTGCCCGCCTCCCGCTGATGCGCAAGTATTAATCAGTGAACCAGAAACAGAACCAGAACAGGAGGAAGAATCCAAGACAGAGCCAGCCCTCGAATCCGCTCCAGAGTCAGAAGCGGAAACCAAGTCCTCGGTGGAGAGACAGGTAGCGGAACTCGAGGCGGAAAAGGAACCGGAACCAGAGGCCCAGTCGGAGGAGGCGGAGTCGCAGGGTGTGGCAGGACCAGAGGCGGGAGTGGAGCAGGGGGCCGAGCGAGACACCGAGGACAGCGCCCTCCTGAGCGAGAAGGAGAGGCAGAATGAGGAAGTGAACGAGAAGGACAACTGCTCTGCTTCTAGCATCTCCTCCGCCAGCAGCACtttagagagagaggagagagaggaaaaactAACCAGCGACAATGAGACGGGTCAGTGGGCGCAGTGCATTAAGGATGTGGATGTGAACGAGCAGTGCAGCAAGATCCTCAACAGCAAGCTCTTCATGTTGGACATGTTGTATGCCCAGAACAAGAAGCCgcaggatgaggaggaggaggaagaggaagaagaggagaaggagaaagacaaagaggagaaggaggagggcgAGGAGTCAGTGGCCAGCTTGGCCAGCCGAATCTCCATCCTCCAAGCCAACAAGCAGGCCTGTGAGGAGAATGTCAAGAAGATGGACATGGAGCAACTGGACAACCAGGGCAGTGTAAAAGCCTTTGCGGAGAAGTTTAACAGTGGGGAGCTGGTCAAGGGCCTGTCAGCAGGGGACAGCGACCATGGCGACAAGCCGCAAGAGAAAGCCGCCCCACCTCCCAAGAAGGAGTCGGACTACATTTGGGATCAGCTGATGGCCAGCCCTCGTGAGCTGAAAATCAAGGACATGGACTTTACAGACTTGGAGGACGAGGATGACATAGACATCTTGGACATGGATAGTGTTATGGGCACCCGGGAGACGATccttcctccacctccccctcctccttcttTCATGGCCttacctccccctccccctctttttgcctgcccccccccaccccccatgccTGTCTCTAtgctgccccctccccctcccttcaGTGCCGCCCAACACATGGGCTCCCCACAGTTAGCACGAGGTGAGCCCTTGTtccagaaaaagaagaagaccATCAGGCTATTCTGGAACGAGGTACGACCCATGGACTGGCAATACAAAAACCATAAATGCTGCAAAGACTCACTGTGGAATAAATTGGACCCCATCAAATTGGACACTTCCAAGCTTGAGCACCTTTTTGAAACAAAGTCCAAGGAATTGCCAGTCACTAAGAAAACCGCAGCTGACGGCAAGCGTCAAGAAATCATTGTGCTTGACTCCAAAAGAAGTAATGCCATTAACATAGGTCTGACAGTGCTGCCCCCACCAAGGACAATCAAAACTGCTATTCTCAACTTCGATGAGTATGCCTTAAATAAAGAAGGAATTGAGAAAATCCTAACAATGATCCCTACCGAAGAGGAGAAACAGAAGATTCAGGAAGCCCAGCTGGCCAACCCAGACATTCCCCTGGGCAGCGCAGAACAATTCCTGCTCACCTTGTCCTCCATCAGTGAGCTGTCAGCTCGTCTGCAACTGTGGGCCTTTAAAATGGACTACGAGCTCATAGAGAAGGAGGTAGCTGAGCCCCTCCAAGACTTGAAAGAAGGGATGGATCAGCTAGAAAACAACAAGACATTAAGATACATACTATCCACATTGCTCACGATTGGCAACTTTCTAAATGGATCAAACGCCAAAGGATTTGAGTTGAGCTACTTGGAAAAGGTTCCTGAGGTGAAGGACACAGTGCACAAGCAGTCTCTCCTGCATCATGCTTGCAGCATTGTGGTGGAGAAGTTCCCAGATAGCACTGACCTCTACTCTGAGATCGGGGCCATCACTAGATCAGCCAAGGTTGACTTCGATCAGCTGCAAGAAAACCTGAGTCAAATGGAAAGGCGGTGCAAAGCTTCTTGGGATCACCTGAAAGTTATTGCAAAACATGAGATGAAACCAGCTCTCAAGCAGAAAATGTCAGAGTTCCTCAAAGACTGTGCTGAGAGGATCATCATTTTGAAGATCGTGCACAGGAGAATAATCAATAGGTTTCATGCGTTTCTGCTGTTCCTCGGCCACCCTTCGTATGCCATCCGAGACGTGAACATCTACAAGTTCTGCAAAATCGTCAGCGAGTTTGCCCTGGAATACCGCACCACGCGAGAGAGGGTGCTTCAGCAGAAGCAGAAACGAGCCAATCACCGTGAGAGGAACAAGACCAGAGGCAAAATGATCACAGATACGGATGATGAAGAGGACAGTGAGACAGGGAAGTTCTCCAGCACCCCAGCCAGCAGCCAGAACCAGCCTCAGGGATTGCAGTACGCGGAGGATGCAGCCGAGCACGAAAACATGAAAGCCGTTCTGAGGAGCAGCCTGCAAGCCGGGGAGAGCAGCAGTTCTGTGGTGCCGGGGGTCCGCACTCGAACACGCGCCAACAGGGGTCGCATTGGTTCCTGGAATACAATGAATGATGACTCACCCAACGCTACGGATGACGCTGCTGACGAAATCATGGATCGCATTGTGAAGTCTGCGACACAAGTGCCAAGTCAGCGTGCTGTACccagggagaggaagaggtCACGGGCAAACAGGAAATCATTGCGGAGAACACTAAAGAGTGGCCTGACGCCAGAGGAGGCCAAAGCACTGGGACTGATTAGCACCTCTGAAATGCAGGTGTGACAAGACTTCCAGCAGCCTAGAGTGTAaaagcacaaaaagaaaaagagaaacgaAAACGGCACCTGGGTCAATCGTCTCCGTGGCAACAACTTCCAGCTGGCTGCCATTCACACCCACTCCTGACAATCCCATCACCTCTGAGCTCCTTTGTGTTGTATAACATTGTTAAGGAGAAAGAGCAAAAGAAACAGACCTTTTGGTAAAGGGTGTTGCAGCTCAGCCATAAAACTTTGAACAGTTACAGAAATCAGGattgtttttgaatattttagaagttaaaaaaacgtatggctttttttttttcttttttgtttatttaaactgaTGTGGTTAGTAGAGTTTCCCCTGTTGCGTTAATTGTTCCTGTATGAGCTGTGTTTGCGTTGGCCACTCATGTggctgtaatgtaatgtaactcaTGTAGCCTTGTCAGTGTGAAGAGACCAGGTTAGCTGCCTGTTAAGTTGCAGtctactgttttgttttatttttttaatcattattattttataaggcTTGCAGCATGAAGCAAGTGTTGTCCCATAGTGTGCAGCATAGGCAACAGCACAGTTAAACCTGAGAATATACTTGACACTGCACAAATGGTTTTCATTGTGAGTAAAATATAGAGGGATTTTGTACAGGCAGAACTGTTGGGAGTGTGTATTGCCAatgaatatacagctctgggaaaaaattaagagaccactgcaattttttcttaaatcagcatctctacatgtatggcagccgttccatttcattcatatttgtatttgggagaaatgttgtcagtagtttatagaatgaaacaaaaatgatcattttacccaaacacatgcCTGTAAATGGTAAAATCAgaaaaactgataattttgcagtggtctcttaattttttccagagctgtatattattcATATGACCCAGTAAACCTTGGGGACTGAACTAGAAGAATTATTTTGCCAGTTGATATCAAAATCATCACAGTGGTGGTGCAGAATGCAGCATGTGTTGCACCCTGAAAGTTTTtagacactttttttgtttttagagagGTTGTTTTTTTAGGCGAAAGTAAATGAGTGACCCATATCTCAATGTGTCCGAgaggaaaatatttgttttctgccGGAAAACAGAATGCTATAGCACAGCATGATTAGCTGATTAACTCCGGGTTGCTTTATCATGCTTTATTAGTccttatacagtactgtactttgTGAATGTTTCAACCATTGCCAGGTTGTACTGTTGTTGTGGTTAGAATGGACATagctgaaaaggaaaaacagtgtTTGGATATTGAGAGgaatataaaattaagaaatatacaaatgaGCAGGCTTCACATGCTCTGCAGCAGGAATTGAATTTAGTAACCTGTAAGTTAACTGTTAAAGTGCAGTGCAATAGAACAGAGTTTAGTTTCCTCTATGAGCTATTTTAAGGAAGAGATGGAAAAGTATCTTCAAAATGTCCTGTAATATCACAGAAGGCAGTAGCTGTGATTGACAAAGTTCAAAGTGTGTATACAGAATAGGTCTGTTAGCAGCCAACTGGATAGTATATtatcaaagaaaatgtgaaagtaCAGCTTTTTTATATAAGCTTTTTGTATCTGAGAAAGAGATGTGCACGTTGCTTCTTCAGCTAAGGATGGACAGGATGTCAGTATACATCACTGTCAGAAGTGTCGCAAAAGTATAGGGCATCTGCAACAGAAAAGAGAGGTAGAAGGAATTACAGAAATAGGGTAGGAAGTGGAAGTTAAAGAGAAAAGGCAAAAATTTCCTTGGTTTATACAGGCGGCTAACtaagaacattattattttttcaaaactgtaaGAAAGGGAAGTTAGAAAAGTAAAAGCACAATTATAAACTCAACAGGTTGAATAGTTAAGGATCCGCATCAGTACCTGCATGGCTCTCCATTCTACAGCAAGGGGCTTCATTTTGCTTTCTTGTTATGTCTCCTCTTCGTTAGGCAGAGCATGATTAagattacagattttttttttgtctagaTAGTCTTATGATAGCTGCATAACCTCTTCAAACAATCAAGTTGCATCCTTTAAAAAGAGAATCCTCTCGTTAAAGTTTTTTGTTAGCTTTATtacccacaaaacaaaaacgaaaaGGTCCCTTAATGtagaatatatatcatatatgctGTATTTCTCATTGTGTGCATCATACATTCAGTTAGACTGCTGAGCAATGCGTTCTTAACACTGACAATGCTTTTTTCATGTTAATCCTTAACCTGTAGGCACTAATGGACTGTATCAAGAAGCTCATCCTAATTTTTCATTCGCTGTTGGTCTCTTTCGTCTAAGTAAtgatatgttgtatttttaatctgaCACCCTGACATTGTCTGTATTCctgccagatttttttttcttcaaccaCAGACAGTATATCTTGGAATTGGGTTGTGTATAGGAGAAAGAGTGGAGTTTCATCAGATTTGCACACGCTTATGGTACGAAATCATCAGATTCTCTAACTGTGGTAAATATGAGACAGGGAAGGAAAGGTTATCTTACACAGAAATTGGAGATGTAACTCATGCTACAAATGGGATATGAATTAGTTTCTATGGaggccatttaaaaaatatagattaGCTCTTGACCCTTGCTAGTTTAAAACCGCTTAGTGTCCTTTACTGCCACTAGCACTAAAGACAAGGAAAAGGTCCAATATTTAAAGTGACTGTTTTGCAGTagaatcacacacactgacGAGCTTCAGATTCTTCAGTGCCTTTGGGGAAAGAAGTCTGTAATCATTCTGAATTATTtagggaaataaaatgtggatctaatgtaatgtaatgactaTGATACAATTGGGCAGCTATCATTTTCAGCAACacttcaaacaataaatatcTGCCCATTTCAGACCATTAAACTGTCTTTCACAAGGTAGATAACACcgtatttgatttatatttattttaagaaaacagacaAGTTTTTCACGTATTCTATTACATTCATTAGTGCCCGGCAAGGTGCTGAATCTTAAATTAGGCACATTATAACAAGTTACAACTGCTTAATGGACTATagtgtaaaatacatatatcttGAAGTTATCCACACTAATAATTTTCACAGCACAATGCCCGAGTTACTGAACTCCTTGCTCTTCGTAAACATGGCACTActatcattttgtattgttttctcatGGGGGATATACGGAAGACCTAGTATAATACTGCTAAAGCGCCAGTAGTACGTACTGTCCAGCACCTTATGTACCATCTGTAGCATGAATTtctatggagaaaaaaaattataatatcacTGTCTTTAGACACAGTTTTTTCTCAGTTGTAAGCTGAGcattgtaaaaaagaaaaaaaaatgtaaagttgaAATGGAAAAGTATTTAGAAGCAAAAGCAGAAGGacaaatgctgtaaaattgtgtaaatgtcacgctctgtgttgttttgtgtagaATAGTGTAATATAGGCTAAATAGCAATGTTATTCTGTGAATTGtaatttaagagaaaataagCCATGCATggtaaaaaaaagacaaaagacaaaaaaatatattatctacAGATGTGTTGCTTATTCTAGATAAGGGAGTTTCttatgtgttttgatttaatgtcaGTGAAATTGCTTCTgttatatgtacattttctccTATACTCCTTTTAGGATGATTGAATCAATCCACCCACCTTGAACTCATATTAAAGCCTTAGGAAGCATTTTTTTCCACTGCATATTTTTGCAAAAAGGAGACAAAATTGTTTCCCATAACTTCAGAATTGTTCTCATAATCTCTCCCTTTCAGTGCCATGCAATGTTAAAGTGAGAAATGGACAACACAAACTATTTAAACAGTGAATTTTCAGTTTTACACCCACCCC

Function

GO: NA

KEGG:

id description
K23939 FHOD3, FHOS2; FH1/FH2 domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111048 lncRNA upstream 204991 34419791 ~ 34420057 (+) True G89010
TU111044 lncRNA upstream 237376 34387254 ~ 34387672 (+) True G89006
TU111010 lncRNA upstream 238846 34383959 ~ 34386202 (+) True G88981
TU111009 lncRNA upstream 251383 34369970 ~ 34373665 (+) False G88980
TU111008 lncRNA upstream 252868 34369970 ~ 34372180 (+) True G88980
TU111320 lncRNA downstream 727954 35406710 ~ 35406984 (+) True G89222
TU111386 lncRNA downstream 1182160 35860916 ~ 36195602 (+) True G89280
TU111391 lncRNA downstream 1213407 35892163 ~ 35893862 (+) True G89283
TU111393 lncRNA downstream 1221887 35900643 ~ 35901176 (+) True G89285
TU111411 lncRNA downstream 1285002 35963758 ~ 35970466 (+) True G89298
AMCG00021876 mRNA upstream 17427 34596916 ~ 34607621 (+) True AMCG00021876
AMCG00021869 mRNA upstream 211839 34406849 ~ 34413209 (+) True AMCG00021869
AMCG00021862 mRNA upstream 301126 34304949 ~ 34323922 (+) True AMCG00021862
AMCG00021859 mRNA upstream 338729 34274666 ~ 34286319 (+) True AMCG00021859
AMCG00021858 mRNA upstream 802962 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021875 mRNA downstream 6259 34685015 ~ 34690667 (+) True AMCG00021875
AMCG00021874 mRNA downstream 21092 34699848 ~ 34716167 (+) True AMCG00021874
AMCG00021872 mRNA downstream 39910 34718666 ~ 34736343 (+) True AMCG00021872
AMCG00021871 mRNA downstream 141584 34820340 ~ 34824676 (+) True AMCG00021871
AMCG00021883 mRNA downstream 302821 34981577 ~ 34983088 (+) True AMCG00021883
TU110433 other upstream 4230827 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 4230827 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 5242775 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 5242775 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 5559709 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 247797 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 359083 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 532377 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 1285815 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 1285815 35964571 ~ 35967384 (+) True G89299

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020766 True 2542 mRNA 0.50 11 NC_007127.7 18608978 ~ 18652646 (-)