RNA id: AMCG00021875


Basic Information

Item Value
RNA id AMCG00021875
length 2356
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00021875
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34685015 ~ 34690667 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtttggCTGAACCTGGGCTCTTAAAGGGAGTGTGTGCGCAGAGGCTGCGTGTTGTAAGTTTGTCGTTGGTAGTTGAACGTCTGCTGCCGCTTTAATAGTCTTACAGCTGCTGCGCTTCGGCTTGTGTTTGTACGAAGTTCCCGGCCTCGACAATGGCAAAAGACATGTTTTTGTACTGGGGCTCGGGCTCTCCTCCTTGTTGGAGGGTCATGATTGCACTAGAAGAAAAGCATTTGCAGGGCTACCAGCACGAAATGCTCTCTTTCGAGAAACAGGAGCACAAGTCAAAGGAGGTGCTGGAGATCAATCCCAGAGGACAGCTTCCTAGCTTCAAGCACGGCAACATTATACTCAACGAGTCCTATGGCGCTTGCATGTTCTTGGAGAACCAGTTCAAGTCCCAGGGCACTGTGCTCATCCCTGAGGGGGCTGGGGAGCAGGCACTTGTTTACCAGAGGATGTTTGAGAATTTGACTCTGCAGCAGAAAATGGCTGATGTCATTTACTACACATGGCGCATCCCTGAGGCTGAGCGCCATGAGTCCGCACTGAAGAGACACAAAGAGGCTCTTGCTACGGAGTTCCAACTCTGGGAAGAATACTTTCAGAAGATGGATGCAGGGTCGTATGTGTCTGGAAAAAACTTCACCATGGCTGATGTGATGGTGTTCCCACAGATCGCTTTTGCCTTTCGCATTGGGCTTTCCCAGGAGAAGTACCCCAAACTGACCGACTACTATAACCTGCTAAAAGATCGTCCCAGTGTCCAGGCTTCCTGGCCCCCTCACTGGAAGGAGAATCCTCAAGGAATGGATACTCTGAAGGAGTTGTAACGCCACAGGTTTCACCTTGTAGCATTTGTGAAGATTTGTCATTCTCAGTTTTCCATAGCTACTGATCACGAACATGGGGAAAGCTGTGTAACCACTCTTTAAGAAAGCACTTTTGACAGTTTTGTATTGGCTTGAAGCTATATGTCTCGGTTTTCCCCTCTTGATATTTGTTGTGTAATCTTAAATCTGACAATCCCGGAAATGTGGACACTATTCACTagagcagtttgttttgttggtttataTGCTGCAGACCATAATTAAGTCATAGTTCAAGCTTGTTAAGGTGTTTTGGGTAAAATTGCCTTGGTActaaaatctttaaattattgcattttggCTGCTTCTGTGCAAATTGAGCGCATATATCAAGAGAACAGCTATGCAATGGCAGTCTCTTTCCTCACTGTAATTTGCTCAATAGCAAGTGCTTAGAGCAGTAAGTGGATAAAATAACTTGCCTTTTGATGTGGCTTTTGTATGGATTTACTTGTTTGTATATCAAAACTCAAAGattcacaacttattaataaaGTGACCATCACATTCTATTCAAATCTGATTTGGTTTTAATCAGAGTTGAATTTAATTCAGCATAGTTCCTGTCTTTATACACCCAACTCCTTCCTACCTACAATCTCTGGTCACTCCTTATATCCTCTCAGCATCTTCTACAGGATTTAGTCCTGCCTTCCCCCCCCAGTGTGGGACTGCTTTGGTACACTTCCTATAACCTTGCAATTATGGAATGAGTTGTTCATTAACTTAAGGAGGCAAGACTGTGCACTTCTAAAGACCTGTTTAGATAACATCACCATCCTTATCTTGTGTACCTTTTTTTactaatttgtaaattaatcttCTAGTAAAGTTACCCTTGAAATGTGTACGTAGAACATTGTATGTTTGTGATTAACCATGTATTTcatcctgtttaaaaaaaaaaaaaaaacagctaaataACATTGAAATGAAGAGCATATGAATCACTGAAAGCTTAAACTATAACCTCACAATAACCAGGTTTTCTCAGATGCCTGGAAAGGAAATTATCAAACCAAACCATTGTagatacatttctgttatttgATTTTTCCTTGAGAACCCCCTTATCACGGTCTATGGGATTCACTTACTACTGCAGTTCAgctacaaacttaaaaaaatacccCCTTCCAAATAAACAACCTAGTGGTTACCATCAAAAAAACCGCTGTTTATGCCTTTAGCCAATGAGCTGGTCCCAAACCAGAATTCCCTTTTTAGTGTGATGGTATATTCATAagcatattaaatgtaatgctgaTAATAAACtaagtaaacatttaaatacagccTCTTCAGAACAGGCTAGGTTTCACATCCTGTGGCAATAACATTCCATAATAAAGCACTGTTTTTTGAGGGATTTGACAATGAAACATGTATAATCTTTCTGCAAACTTAATATTgtgattaaatttaaaatatacattgatcagccataacattatgaccactgacaggtgaagtgaataacact

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004364 glutathione transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111048 lncRNA upstream 264958 34419791 ~ 34420057 (+) True G89010
TU111044 lncRNA upstream 297343 34387254 ~ 34387672 (+) True G89006
TU111010 lncRNA upstream 298813 34383959 ~ 34386202 (+) True G88981
TU111009 lncRNA upstream 311350 34369970 ~ 34373665 (+) False G88980
TU111008 lncRNA upstream 312835 34369970 ~ 34372180 (+) True G88980
TU111320 lncRNA downstream 716043 35406710 ~ 35406984 (+) True G89222
TU111386 lncRNA downstream 1170249 35860916 ~ 36195602 (+) True G89280
TU111391 lncRNA downstream 1201496 35892163 ~ 35893862 (+) True G89283
TU111393 lncRNA downstream 1209976 35900643 ~ 35901176 (+) True G89285
TU111411 lncRNA downstream 1273091 35963758 ~ 35970466 (+) True G89298
AMCG00021873 mRNA upstream 6259 34625048 ~ 34678756 (+) True AMCG00021873
AMCG00021876 mRNA upstream 77394 34596916 ~ 34607621 (+) True AMCG00021876
AMCG00021869 mRNA upstream 271806 34406849 ~ 34413209 (+) True AMCG00021869
AMCG00021862 mRNA upstream 361093 34304949 ~ 34323922 (+) True AMCG00021862
AMCG00021859 mRNA upstream 398696 34274666 ~ 34286319 (+) True AMCG00021859
AMCG00021874 mRNA downstream 9181 34699848 ~ 34716167 (+) True AMCG00021874
AMCG00021872 mRNA downstream 27999 34718666 ~ 34736343 (+) True AMCG00021872
AMCG00021871 mRNA downstream 129673 34820340 ~ 34824676 (+) True AMCG00021871
AMCG00021883 mRNA downstream 290910 34981577 ~ 34983088 (+) True AMCG00021883
AMCG00021881 mRNA downstream 338203 35028870 ~ 35077090 (+) True AMCG00021881
TU110433 other upstream 4290794 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 4290794 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 5302742 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 5302742 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 5619676 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 235886 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 347172 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 520466 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 1273904 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 1273904 35964571 ~ 35967384 (+) True G89299

Expression Profile