RNA id: AMCG00021876



Basic Information


Item Value
RNA id AMCG00021876
length 443
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00021876
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34596916 ~ 34607621 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACTTGGACAGATCATGCTGTACGTGGATGGGATGAATGGGGTAATCGGTCACAATGAAACCATACAGTGGCTGTACACACTCATAGGATCAAAGttcCGCCTGGTAGTGAAGACTGCCCTGAAACTGCTGCTGGTGTTTGTGGAGTACACAGAGTTCAATGCTCAACTTCTCATTGAGGCTGTCAGTGCTGTCGACGCAAAGAGAGGTACCAAGCTATGGTCGAACGCCATGGAGATACTGGATGAGAAGGATGGGGTGGACACGGAGCTTCTCGTTTATGCCATGACATTAGTCAACAAGACACTAGCAGGGCTGCCAGATCAGGATTCCTTCTATGATGTGGTGGACTGTCTGGAGGAGCAAGGCATTGAAGTAATTGCACAAAGACACTTGAATAAGAAAGGCACCGACCTGGACCTCGTGGAgcagtttaatatttat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111048 lncRNA upstream 176859 34419791 ~ 34420057 (+) True G89010
TU111044 lncRNA upstream 209244 34387254 ~ 34387672 (+) True G89006
TU111010 lncRNA upstream 210714 34383959 ~ 34386202 (+) True G88981
TU111009 lncRNA upstream 223251 34369970 ~ 34373665 (+) False G88980
TU111008 lncRNA upstream 224736 34369970 ~ 34372180 (+) True G88980
TU111320 lncRNA downstream 799089 35406710 ~ 35406984 (+) True G89222
TU111386 lncRNA downstream 1253295 35860916 ~ 36195602 (+) True G89280
TU111391 lncRNA downstream 1284542 35892163 ~ 35893862 (+) True G89283
TU111393 lncRNA downstream 1293022 35900643 ~ 35901176 (+) True G89285
TU111411 lncRNA downstream 1356137 35963758 ~ 35970466 (+) True G89298
AMCG00021869 mRNA upstream 183707 34406849 ~ 34413209 (+) True AMCG00021869
AMCG00021862 mRNA upstream 272994 34304949 ~ 34323922 (+) True AMCG00021862
AMCG00021859 mRNA upstream 310597 34274666 ~ 34286319 (+) True AMCG00021859
AMCG00021858 mRNA upstream 774830 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021855 mRNA upstream 1010416 33548596 ~ 33586500 (+) True AMCG00021855
AMCG00021873 mRNA downstream 17427 34625048 ~ 34678756 (+) True AMCG00021873
AMCG00021875 mRNA downstream 77394 34685015 ~ 34690667 (+) True AMCG00021875
AMCG00021874 mRNA downstream 92227 34699848 ~ 34716167 (+) True AMCG00021874
AMCG00021872 mRNA downstream 111045 34718666 ~ 34736343 (+) True AMCG00021872
AMCG00021871 mRNA downstream 212719 34820340 ~ 34824676 (+) True AMCG00021871
TU110433 other upstream 4202695 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 4202695 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 5214643 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 5214643 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 5531577 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 318932 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 430218 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 603512 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 1356950 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 1356950 35964571 ~ 35967384 (+) True G89299

Expression Profile