RNA id: AMCG00021882



Basic Information


Item Value
RNA id AMCG00021882
length 546
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00021882
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35077101 ~ 35086504 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AtgtcttcaaaaataaaattaaaagacatTTATTCTGCTCTGCATGGTGTGAATCCTGGAGCGGAGGTTGTGATTTCTACCTGTGGTCTCCGGAGTGACAGACACTATGGAAGTAGCTTCGACTCTGACAGCTTGGAGAGCCCTGAACAAGCGAGGCTGCTGGACACTGCACTGGGAGTCTCAGAAGAGCCTATTCTCAGACAAGGACTTCATCATTCAGAAACATCACACAGTCTGCCTGCCCTTCTGGATGACAGATGTGCTAATCCACAAGTAGGAGCCAGTGGTAATGAGGAGAGGATTAAGGAGCACTGCATTGAAATGTACAATGTATCTTTGACAGGAAGTAAAGATGTTCTCACCCCTGGTCAGAAAGTAGAGgAAGATGAGATGATACCAGAACTACGAATGTCTGTAACGAAAGAAGATAACAGGAGAGAGACTGAAGATTGGCAACAATGGCAAAATGAGTTTAGAGGTCAAATTCGAGCTCTGCGCCACTGGTTGAAAGGAATGGAGATGAGGCTTCCCCCTGTGGATCCTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111048 lncRNA upstream 657044 34419791 ~ 34420057 (+) True G89010
TU111044 lncRNA upstream 689429 34387254 ~ 34387672 (+) True G89006
TU111010 lncRNA upstream 690899 34383959 ~ 34386202 (+) True G88981
TU111009 lncRNA upstream 703436 34369970 ~ 34373665 (+) False G88980
TU111008 lncRNA upstream 704921 34369970 ~ 34372180 (+) True G88980
TU111320 lncRNA downstream 320206 35406710 ~ 35406984 (+) True G89222
TU111386 lncRNA downstream 774412 35860916 ~ 36195602 (+) True G89280
TU111391 lncRNA downstream 805659 35892163 ~ 35893862 (+) True G89283
TU111393 lncRNA downstream 814139 35900643 ~ 35901176 (+) True G89285
TU111411 lncRNA downstream 877254 35963758 ~ 35970466 (+) True G89298
AMCG00021881 mRNA upstream 11 35028870 ~ 35077090 (+) True AMCG00021881
AMCG00021883 mRNA upstream 94013 34981577 ~ 34983088 (+) True AMCG00021883
AMCG00021871 mRNA upstream 252425 34820340 ~ 34824676 (+) True AMCG00021871
AMCG00021872 mRNA upstream 340758 34718666 ~ 34736343 (+) True AMCG00021872
AMCG00021874 mRNA upstream 360934 34699848 ~ 34716167 (+) True AMCG00021874
AMCG00021880 mRNA downstream 22111 35108615 ~ 35175768 (+) True AMCG00021880
AMCG00021884 mRNA downstream 113741 35200245 ~ 35218131 (+) True AMCG00021884
AMCG00021886 mRNA downstream 493455 35579959 ~ 35593338 (+) True AMCG00021886
AMCG00021894 mRNA downstream 778245 35864749 ~ 35887253 (+) True AMCG00021894
AMCG00021893 mRNA downstream 897551 35984055 ~ 36013655 (+) True AMCG00021893
TU111156 other upstream 35813 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other upstream 35813 35037839 ~ 35041288 (+) False AMCG00021881
TU110433 other upstream 4682880 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 4682880 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 5694828 29378575 ~ 29382273 (+) False AMCG00021779
TU111226 other downstream 124629 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 878067 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 878067 35964571 ~ 35967384 (+) True G89299
TU111747 other downstream 3034753 38121257 ~ 38151049 (+) True G89578
TU111748 other downstream 3034753 38121257 ~ 38151049 (+) False G89578

Expression Profile