RNA id: AMCG00021884



Basic Information


Item Value
RNA id AMCG00021884
length 936
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00021884
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35200245 ~ 35218131 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACTTTGACAAAACTATCAAACACTTCAGCCTTAGACAGTCTCAAAATAGAATCTATTAGTCCCAAAGCAGAATTAAACTGTGCCAAAGTAGAATCGAATAGTCCCAAAATACAATCAGACGAGAACAAAATAGTGCCAGACCACAGATTCTGTGCCTGCACACACTGTATAAGTAAACCAAATGTTTCAGAATGGTTTGACAAACGTTTCAATTCCACGGCTCACCCTTTGTTGTCCAAGACAAACAGCAATCTGTCTGAGGAGCAATACCAATTTTGGAtgcAACTGCAGCCTCAAAACCCCTCCGCTTCCTATGATGTCATCATACAAAGGTTGTTGGAGCTCTTTCCCAGTGAAGACAATTATCTAGACCAAAGCCCTTCACGCTGCAGGTCTTGTGCTATAGTGGGGAACTCGGATAACCTCAGTGGATCCAATTATGGTACCATGATTGAGGAACATGACTTTGTGATGAGAGTGAACAGAGGCAAAACTGAGGGATATGAAAAGGATGTAGGGGCTAAAACAACTCATCATTTCATGTATCCAGAAAGTGCCACAAACCTAAAAAACAATACCAGGCTGGTACTGGTTCCTTTCAAAATCATTGATCTCCAGTGGCTTATCAGTGTTGCAACGAAAAGCAAAGTCTTGGTTTACCATCCAGCCTTCATCAAGTATGTTTATGACATATGGACAGAAAAGCATGGGAGATATCCTTCCACTGGATTCCTTGTGCTAATATTTGCACTTCATGTGTGTGATGAGGTGAATGTTTATGGATACGGTGCAAACAGCAAAGGTGAATGGAAACACTACTGGGAAAACATAACAGACTCCCCATATCCCTCAGTGCACAGTGGGGACAGTGaatataatactatattaaAGCTTGATGACATTGGAAAGATTAAGCTATATAAGGgaataaaaact

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111048 lncRNA upstream 780188 34419791 ~ 34420057 (+) True G89010
TU111044 lncRNA upstream 812573 34387254 ~ 34387672 (+) True G89006
TU111010 lncRNA upstream 814043 34383959 ~ 34386202 (+) True G88981
TU111009 lncRNA upstream 826580 34369970 ~ 34373665 (+) False G88980
TU111008 lncRNA upstream 828065 34369970 ~ 34372180 (+) True G88980
TU111320 lncRNA downstream 188579 35406710 ~ 35406984 (+) True G89222
TU111386 lncRNA downstream 642785 35860916 ~ 36195602 (+) True G89280
TU111391 lncRNA downstream 674032 35892163 ~ 35893862 (+) True G89283
TU111393 lncRNA downstream 682512 35900643 ~ 35901176 (+) True G89285
TU111411 lncRNA downstream 745627 35963758 ~ 35970466 (+) True G89298
AMCG00021880 mRNA upstream 24477 35108615 ~ 35175768 (+) True AMCG00021880
AMCG00021882 mRNA upstream 113741 35077101 ~ 35086504 (+) True AMCG00021882
AMCG00021881 mRNA upstream 123155 35028870 ~ 35077090 (+) True AMCG00021881
AMCG00021883 mRNA upstream 217157 34981577 ~ 34983088 (+) True AMCG00021883
AMCG00021871 mRNA upstream 375569 34820340 ~ 34824676 (+) True AMCG00021871
AMCG00021886 mRNA downstream 361828 35579959 ~ 35593338 (+) True AMCG00021886
AMCG00021894 mRNA downstream 646618 35864749 ~ 35887253 (+) True AMCG00021894
AMCG00021893 mRNA downstream 765924 35984055 ~ 36013655 (+) True AMCG00021893
AMCG00021899 mRNA downstream 1247655 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021900 mRNA downstream 1432101 36650232 ~ 36657721 (+) False AMCG00021900
TU111156 other upstream 158957 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other upstream 158957 35037839 ~ 35041288 (+) False AMCG00021881
TU110433 other upstream 4806024 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 4806024 30388837 ~ 30394221 (+) False AMCG00021803
TU110267 other upstream 5817972 29378575 ~ 29382273 (+) False AMCG00021779
TU111415 other downstream 746440 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 746440 35964571 ~ 35967384 (+) True G89299
TU111747 other downstream 2903126 38121257 ~ 38151049 (+) True G89578
TU111748 other downstream 2903126 38121257 ~ 38151049 (+) False G89578
TU111805 other downstream 3599741 38817872 ~ 38822685 (+) True G89632

Expression Profile