RNA id: AMCG00021886


Basic Information

Item Value
RNA id AMCG00021886
length 1800
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00021886
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35579959 ~ 35593338 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTCCCATGTTCACATCAGAGGAGGAAACAGTGCATCCCAAAGTCCCAGTGAGACAGCGGAGACCAAAGAAGGAGACCGTTGCAGAGACCGGAGACAGGGGGCGTTTAGGATATGATCGTCCAGGCTCAGAAGTAGATGACTCAGATGGCCAGGACGATtatgacaatgacaatgaagAAGAGGATGAAGATGACAGCCAAGCCGAATCAGTGCTTTCCACTACTCCCTCTGTCACAGCAAGCCCTCAGCATGACACATCAGGCAGTGGTCACAGTGAGTCTCTGGGTGCAGCCAGCACAGAGGAGGAGCTGGGGGTGTTGAAGGAACCAGCCAAACTGGACACCATGCTCCTGGAGACACTTCCCAGTGCTCTGCTGGCACAAATGACCATTTCAGCGGCCACATCTCACAGATCAGTACCTACCTTCCCGCTTTCTGTGACTACTAAAGAAGCACAGACCAGTTGCTATTATGGGACATCCAGCGTACAGACAGAGACTGAGGCACTACCTATGATGAGCCCCAAGTCTCCTAGCCAACAGATGTCAATCGATTACCCAGAACAGGATGAACCCCTCAGTTCTCTTGCATTGAATACAATTGCTGAACAACCAAAGgtgCCCATGCCTGAGAGATACGCTTGCCATCCGAGTGATGCTGGGTTGCCGGTGGATCGCAGCACTCAGACTACATTAGTCTCCTCTTCAGTCTATACCATGCCAcagctgcagcagcttcttCCCCAGTCGCAGCTAGAACCAGTCCCTCCGCAAACACACCTGTTCAGCCACCTGCCTATGCACTCCCAGCAACCAGTGAGGACACCCTACAGTATGATCCCTGTAGGAGGCATCCAATTAGTGCCGGCAGGTCTGGCAGCTTACTCCACCTTTGTGCCAATCCAGGCCGGGCCAGTTCAACTCACAATCCCTGCTGTGAGTGTCATTCACCGTACTTCCGCTCCCCATGGTGAGAATCCCCAAGATGGGGTGTCACGTGCTCGAAGCCCAGTAGCCGTGACAGAACAAGTGAACAATGTTCTGCCTTGCATCCCCATCAGACAGGTCAATGTTACAGGACTGCAGACTCTCAGCACTCAAACCCTGCAGCCCTTGCCTGCCCTTGGGTTGGAAGCACTCAATATTGTAGGCATTGCAAACTCAAATATTGCCCCTCAGGTGCACCCTCAAGGCCTCACTTTGAATGCTTTAGGTCTGCAAGTGCTGACTGCCAACCCTCAGACCCAGAGCTGTCCAAATCCACAAACGCACATACCCGGGCTACAGATCCTGAACATTGCACTGCCCACTCTCATTCCCTCAGTCAGTCCCATAGGAGCTGAAAGCCAAGTGGGAGTAGAGGGCTCGAGTGCCAGCACAAAACCCAATGAGGCTATGCCTGAGCAGGCACCTGCGAATCCTCTAGTGGCAATTAATGTCAGCACTGCCGGTTACATGCCGACTCAACAAATGTCCCCCAGTTCAGAGCTAAAGGCTTCAGAgatcacattttcaaaaaaatctGAGGTGGCATCCAGTTGTGCAGAGAGTACTGTGAAGGAAGAAGCCTCATCACATCCCAAGGCAGAAGCTGCTGCTGTTCGGAGAAGCAGAAACTCACATGCCGAGCACTTTGTAAAAAGTAGTGAGAAAGAGGTTGTAGTGTATAATGCTTCTTTGggaaaaatgtgtgaaacaaGGCCACGCAGGTTGCCTGCAACATCTAGACGTCACATTACAGTTGAGTATAATGATATATCTAGCGATGATGAGGACAGACTTATAATAGCAACGTGA

Function

GO: NA

KEGG:

id description
K09239 HIVEP; human immunodeficiency virus type I enhancer-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111320 lncRNA upstream 172975 35406710 ~ 35406984 (+) True G89222
TU111048 lncRNA upstream 1159902 34419791 ~ 34420057 (+) True G89010
TU111044 lncRNA upstream 1192287 34387254 ~ 34387672 (+) True G89006
TU111010 lncRNA upstream 1193757 34383959 ~ 34386202 (+) True G88981
TU111009 lncRNA upstream 1206294 34369970 ~ 34373665 (+) False G88980
TU111386 lncRNA downstream 267578 35860916 ~ 36195602 (+) True G89280
TU111391 lncRNA downstream 298825 35892163 ~ 35893862 (+) True G89283
TU111393 lncRNA downstream 307305 35900643 ~ 35901176 (+) True G89285
TU111411 lncRNA downstream 370420 35963758 ~ 35970466 (+) True G89298
TU111455 lncRNA downstream 653721 36247059 ~ 36248421 (+) True G89329
AMCG00021884 mRNA upstream 361828 35200245 ~ 35218131 (+) True AMCG00021884
AMCG00021880 mRNA upstream 404191 35108615 ~ 35175768 (+) True AMCG00021880
AMCG00021882 mRNA upstream 493455 35077101 ~ 35086504 (+) True AMCG00021882
AMCG00021881 mRNA upstream 502869 35028870 ~ 35077090 (+) True AMCG00021881
AMCG00021883 mRNA upstream 596871 34981577 ~ 34983088 (+) True AMCG00021883
AMCG00021894 mRNA downstream 271411 35864749 ~ 35887253 (+) True AMCG00021894
AMCG00021893 mRNA downstream 390717 35984055 ~ 36013655 (+) True AMCG00021893
AMCG00021899 mRNA downstream 872448 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021900 mRNA downstream 1056894 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021911 mRNA downstream 2526986 38120324 ~ 38121572 (+) True AMCG00021911
TU111226 other upstream 316422 35211133 ~ 35263537 (+) True G89142
TU111156 other upstream 538671 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other upstream 538671 35037839 ~ 35041288 (+) False AMCG00021881
TU110433 other upstream 5185738 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 5185738 30388837 ~ 30394221 (+) False AMCG00021803
TU111415 other downstream 371233 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 371233 35964571 ~ 35967384 (+) True G89299
TU111747 other downstream 2527919 38121257 ~ 38151049 (+) True G89578
TU111748 other downstream 2527919 38121257 ~ 38151049 (+) False G89578
TU111805 other downstream 3224534 38817872 ~ 38822685 (+) True G89632

Expression Profile