RNA id: AMCG00021890


Basic Information

Item Value
RNA id AMCG00021890
length 918
RNA type mRNA
GC content 0.51
exon number 1
gene id AMCG00021890
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35798190 ~ 35799107 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTAACAACCAGGGGATCAAAGATTGCTCGCTTTTTACTCACTCGCACAAGTCTGCCAAcactagaaaaaataaagattccTCTCTGGGCCTGGGAGAGGCGTCTCAGACTGCAGCCGCGGCCGCCATTGAAGCAGCACCCGCGGTGCCCGCAGCCTTTGGCTGCTACCAGAAATTCTGTCCCAAGTTAAAATCTCTGAGCTCCAGGTTTGACGCTAAATTTGAGGTGTTCGACGGTCGTCTAAATGTTATAGTGAACTCAGTTTCTATTCCGGAAAACTCGCTGACTGAGATCGTCCAGAGAATCAATGTGCTGGAAGCGCGCACTGAAGCCGCGGAAGAGAGAATCGCTGGTGTGGAATCTGCGTTGCCAGCAAACGAGCTGCAGATAAACTCTCTCAAGGACAGTGTGGCTCAGCTAGAGGAGAAACTGGACAATATTGAAAACCGGGCCAGACGCAAAAACATTAGAATCGTGGGGCTGGCTGAAGGTGAGGAGGGGTCGGGcccattgtttaaatatttgcaaaacatgCTGCCTGTCTGGCTCGATCTGCCCCCGTACCAGCCATTTGAAATTGAGAGGGCGCACAGATCCTTAGGACAGAGACCGAGAGCTAACCAGAGACCGAGAAGCATCGTAGTTCACTTTCTGAGATACCTTGACAAGGAGGCTATTCTGAATGCCTTCAGGATTAAACGTGAGGTGACCTGTCCGCGGAGGTGCTGCGCAAGAGGAGAGATCTGGCCGCGGAGAGAGAAGCTCACCGATCTCAGACTCTTCAGGGGTTTTGCCTATCCAGCTAAACTTCGCATTCTGTACAAGGGGAGGATTAAAATTTTTGAAACGTCAGCCATGGCCACCAGGTTTTTAGAGAGGGAGTTGGAAAGCTGTCCTGTGGATCCCCCGGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111367 lncRNA downstream 86474 35711463 ~ 35711716 (-) True G89264
TU111347 lncRNA downstream 342992 35454567 ~ 35455198 (-) True G89247
TU111340 lncRNA downstream 392850 35405057 ~ 35405340 (-) True G89240
TU111310 lncRNA downstream 427710 35370106 ~ 35370480 (-) True G89212
TU111206 lncRNA downstream 717017 35079573 ~ 35081173 (-) True G89130
TU111375 lncRNA upstream 18259 35817366 ~ 35817621 (-) True G89272
TU111491 lncRNA upstream 52929 35852036 ~ 35893714 (-) True G89359
TU111511 lncRNA upstream 168012 35967119 ~ 35985261 (-) True G89373
TU111572 lncRNA upstream 699087 36498194 ~ 36501828 (-) True G89428
TU111576 lncRNA upstream 712492 36511599 ~ 36511931 (-) True G89431
AMCG00021888 mRNA downstream 57680 35727419 ~ 35740510 (-) True AMCG00021888
AMCG00021889 mRNA downstream 125667 35668304 ~ 35672523 (-) True AMCG00021889
AMCG00021885 mRNA downstream 446557 35311289 ~ 35351633 (-) True AMCG00021885
AMCG00021877 mRNA downstream 977811 34811156 ~ 34820379 (-) True AMCG00021877
AMCG00021879 mRNA downstream 988588 34790268 ~ 34809602 (-) True AMCG00021879
AMCG00021887 mRNA upstream 129484 35928591 ~ 35950291 (-) True AMCG00021887
AMCG00021891 mRNA upstream 228173 36027280 ~ 36030435 (-) True AMCG00021891
AMCG00021892 mRNA upstream 255867 36054974 ~ 36058550 (-) True AMCG00021892
AMCG00021895 mRNA upstream 615772 36414879 ~ 36417745 (-) True AMCG00021895
AMCG00021896 mRNA upstream 725779 36524886 ~ 36537718 (-) False AMCG00021896
TU111315 other downstream 402419 35375016 ~ 35395771 (-) True G89217
TU111038 other downstream 1417895 34346988 ~ 34380295 (-) False G89004
TU111040 other downstream 1447065 34346988 ~ 34351125 (-) True G89004
TU110795 other downstream 3728726 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 4666005 31129583 ~ 31132185 (-) False AMCG00021830
TU111504 other upstream 144645 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 615932 36415039 ~ 36438350 (-) False AMCG00021895
TU111619 other upstream 879420 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 2462280 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 2596464 38395571 ~ 38397755 (-) True G89611

Expression Profile