RNA id: AMCG00021893


Basic Information

Item Value
RNA id AMCG00021893
length 1584
RNA type mRNA
GC content 0.43
exon number 12
gene id AMCG00021893
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35984055 ~ 36013655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggaagagaagaagaggaaacgagagagagaagttTGTGACATTGAAGGAGCTGTAGATGATTTGGATCCAGGAGTTAAAGTGGAAGTGGAACAACAAGCAGACAGGCCAGTGAGAGCTTGCAGGACTCAGCAAGAAAATGAGTGTACACCTCGACAGCAACTATTGGAACACTTCCTTCGTCAGCTCCAGAGTAACTGATGCCATTGCACCTGGTTATTCCATGATTATTAAACATCCTATGGACTTCAGCACAATGAAGTACAAGATCACGACCAACGACTATAAAACCGTTACAGAATTCAAGGCTGATTTCAAACTCATGTGTGATAATGCGATGGTGTATAACAGACCAGAAACGGTATATTACAAGGCGGCAAAGAAGTTGCTTCACACGGGATTTAAGATGATGAGCAAAGAGCGGCTTTTAGCTTTGAAGCGCAGCATGTCGTTCATGCAGGACATGGATTTTTCTCAGCAGGCTGCTATTTTAGGAGATGAAGATATAGCAACAGAAGAGCCGGTACCAGAGGTCATCCCTGTACCTGTCGAATCCACAAAGAAATCAAAGAAACCTGTGAAAGATATGAAAGAAGTCATAAGtTATCTGTATGAACCTGAAGGCAATGCTTGCAGCTTAACAGACAGCACAGCAGAAGAACATGTCTTAGCCTTGGTGGAACATGCTGCCGATGAAGCTAGAGACAGAATTAACAGATACATGCCTAATTCCAAGGAGGAAACCAATCCTGTGGATTTAAGCTCCCTGTCAAATAAACTCTTACCTGGTCTAACTACTTTGGGCTTCAAGGATGATAGGAGACTCAAAGtgACATACTTAAACAGTGCCTATAACACACAGTCtttgcaacacaacacaatcttCCCGGATCTCCGACCAGATGAAATGGACCTTTTGTATTCTGCATATGGGGATGAAACTGGTGTGCAGTGTGCCCTGAGCCTACAAGAATTTGTTAAAGGCTGCGGGAGCTTAACTAAGAAAATTGTGGACGGTCTATTAGATCAGATGACTGGAGGTGATCACTCAAAAGCCATCTTCCAAATCCGACAGgttGGAGACGTAGCTGTTAAGACAGTGAAGAAGGAACCGGACCATGACGATGGACACCTGCATTTTGATGAGACAACCAAGCTGCTGCAGGACCTCCATGAGGCTCAAAACGACCGGGTGTGCTCCAGGCCCTCCTCCAACCTCAGCTCCCTGTCTAACACATCTGAGCGGGAACAGCACCATCTAGGTAAAGgctcaaataaaacaaggagtCCAGTTCATCTGGCTGTGGGAGACCAACCTGAAATGGTCCATGATCCCTATGAATTCTTGCAATCACCAGAGCCTGGGTCTACTGCCAATAGCTGATTCACATAAAACATGTGTAGAAAAGTGACAATTTTTATATGATTTGTTACTtacttgtatgtgtgtgtatgtaattttTAATATGTGTTACTGGGGTGGTACCTCTAATGCTACCTACCATTCAGTGCTGACTAGTTgtgcaaaacaatattttttgtatgtcttttgaatacaaataaatgttgttcAGTCAATTTTATA

Function

GO: NA

KEGG:

id description
K22184 BRD9; bromodomain-containing protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111411 lncRNA upstream 13589 35963758 ~ 35970466 (+) True G89298
TU111393 lncRNA upstream 82879 35900643 ~ 35901176 (+) True G89285
TU111391 lncRNA upstream 90193 35892163 ~ 35893862 (+) True G89283
TU111320 lncRNA upstream 577071 35406710 ~ 35406984 (+) True G89222
TU111048 lncRNA upstream 1563998 34419791 ~ 34420057 (+) True G89010
TU111455 lncRNA downstream 233404 36247059 ~ 36248421 (+) True G89329
TU111470 lncRNA downstream 400989 36414644 ~ 36415841 (+) True G89342
TU111575 lncRNA downstream 497534 36511189 ~ 36511500 (+) True G89430
TU111590 lncRNA downstream 548352 36562007 ~ 36562413 (+) True G89443
TU111595 lncRNA downstream 582064 36595719 ~ 36615546 (+) True G89448
AMCG00021894 mRNA upstream 96802 35864749 ~ 35887253 (+) True AMCG00021894
AMCG00021886 mRNA upstream 390717 35579959 ~ 35593338 (+) True AMCG00021886
AMCG00021884 mRNA upstream 765924 35200245 ~ 35218131 (+) True AMCG00021884
AMCG00021880 mRNA upstream 808287 35108615 ~ 35175768 (+) True AMCG00021880
AMCG00021882 mRNA upstream 897551 35077101 ~ 35086504 (+) True AMCG00021882
AMCG00021899 mRNA downstream 452131 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021900 mRNA downstream 636577 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021911 mRNA downstream 2106669 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021910 mRNA downstream 2123467 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021912 mRNA downstream 2382151 38395806 ~ 38397674 (+) True AMCG00021912
TU111415 other upstream 16671 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 16671 35964571 ~ 35967384 (+) True G89299
TU111226 other upstream 720518 35211133 ~ 35263537 (+) True G89142
TU111156 other upstream 942767 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other upstream 942767 35037839 ~ 35041288 (+) False AMCG00021881
TU111747 other downstream 2107602 38121257 ~ 38151049 (+) True G89578
TU111748 other downstream 2107602 38121257 ~ 38151049 (+) False G89578
TU111805 other downstream 2804217 38817872 ~ 38822685 (+) True G89632
TU111914 other downstream 3386869 39400524 ~ 39408261 (+) True G89728

Expression Profile