RNA id: AMCG00021894


Basic Information

Item Value
RNA id AMCG00021894
length 1890
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00021894
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35864749 ~ 35887253 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttggaTTGAAGCAAAAGCTCATAACCACAATCCCAGAGAGTGCTTTGTTAATCTTCATTGGGTTAGTACTGGGTGGCATTGTATGGGGAGCAGACAAAGTACAAACTTTCAGCCTGCAGCCCACAGTGTTTTTCTACTTTCTCCTTCCACAAATCATCCTGGATGCCGGCTACTTCATGCCCAACAAGCTGTTCTTTGGAAACTTGGGAGCCATCCTTGTGTTTGCTGTTATTGGCACTTGCTGGAATGCTGCCACAGTTGGGTTATCATTGTGGGGTGTTTATTTAGGTGGTATCATGGGTGACATCCAGATCAGTCTGTTGGAGTTTCTCCTCTTTGGAAGCCTCCTCTCAGCAGTTGACCCTGTGGCCGTAATAGCTGTCTTTGAAGAAGTTCATGTTGACGAAGtcctatttattattgtatttgggGAATCTCTTCTTAATGATGGTGTAACAGTGGTGCtgtacaatgtatttgactcttttgtATCAATAGGAGGGGAAAATATCAATGCTGCGGAAATTGTAAAAGGAGTGGTGTCATTCTTTGTCGTGGCCTTTGGTGGTTCACTAGTGGGAGTTGTGTTTGCAATACTTCTCTCCTTGTTGACAAGAGTAACCCAAAACATCCCGATTGTGGAACCTGGTTTCATCTTCATCCTCTCATACCTCTGCTACCTCACTGCGGAGATGCTCTCCCTGTCACCTATTCTAGCaataACATTTTGTGGTATCTGTTGTCAAAAGTATGTCAATGCCAATATGCATCAGAAGTCGGTGCAAACTGTGAAATATGCAATGAAAATGTTGTCCAATGGATCAGAAACCATCATCTTTGTATTTTTGGGAATCTCTGCCATTGATACCACAATATGGGTTTGGAATACTGCCTTCATCCTCCTCACCCTGGTGTTCTTATTAGTGTTCAGGTTTATTGGAGTCTTTGCTTTGACATGGGTTTTAAACCGCTACAGACTGGTACCCCTGGAACTCATAGACCAAGTGGTGATGAGCTATGGAGGCCTACGAGGGGCTGTGGCATATCTTTTAGCAGTCATGTTGGATGCAAacaaaattaaggaaaaaaacCTCATGGTCAGCACAACTATACTTGTTGTCTACTTCACTGTCGTCTTACAGGGTGTAACAATCAAGCCATTGGTGACCTGGCTGAAAGTGAAAAGGAGTGCACACtatgatcctctgctgattgtAAAACTACAAAGTAGGGGTGAGAAAAAAGGATCACTAGCCTTTTTGAGGTCTGACAATGATGCAAATGtggattttgaaaagaaaattggTGCTGCGATTACAGATATAACTCCAAAGGGAACACCTGATGATACTCCTGTATCCACTATTCTGCGGGATCATGTCAGTTCTGTGTGTCTTGATTTGCAAGCCTTAGAGCAGGGAAGAAACAAATTTGGGGCATTAGAGGACATGGACACTCATCACATACTACAGCAACACCTGTATAGGGCGAGGAAGCAGCACAGGCACGGGTACAGCAGAAACCGTATCAGCACAAACAAAGATGAACATGAAGTCCAGGAAATTTTCCAGCGCACCATGAGAAGGCGACTAGAGTCATTTAAGTCCACCAAGATGGGGgtccaaaacaaaaagattattCACAAACCCAAAAAGGATCAAACAAATAAGGAACTACCAGCTCCTCTGAGGACTCCACCATGGATCGCCAGTGATGATACTGTTGTGCCCTCACAGAGAGCTCGTATACAGCTGCCCTGCTCCCCCAATAACTTCCGCAGACTCACTCCTCTGACACTCAGCACAAGATCCACAGACTCCTTTCTGCTAGCTGATATTCCTTTTCCTGATGAGCATCCTCACTCCTTTCTGCCCAAAGGGACAAATCTC

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111320 lncRNA upstream 457765 35406710 ~ 35406984 (+) True G89222
TU111048 lncRNA upstream 1444692 34419791 ~ 34420057 (+) True G89010
TU111044 lncRNA upstream 1477077 34387254 ~ 34387672 (+) True G89006
TU111010 lncRNA upstream 1478547 34383959 ~ 34386202 (+) True G88981
TU111009 lncRNA upstream 1491084 34369970 ~ 34373665 (+) False G88980
TU111391 lncRNA downstream 4910 35892163 ~ 35893862 (+) True G89283
TU111393 lncRNA downstream 13390 35900643 ~ 35901176 (+) True G89285
TU111411 lncRNA downstream 76505 35963758 ~ 35970466 (+) True G89298
TU111455 lncRNA downstream 359806 36247059 ~ 36248421 (+) True G89329
TU111470 lncRNA downstream 527391 36414644 ~ 36415841 (+) True G89342
AMCG00021886 mRNA upstream 271411 35579959 ~ 35593338 (+) True AMCG00021886
AMCG00021884 mRNA upstream 646618 35200245 ~ 35218131 (+) True AMCG00021884
AMCG00021880 mRNA upstream 688981 35108615 ~ 35175768 (+) True AMCG00021880
AMCG00021882 mRNA upstream 778245 35077101 ~ 35086504 (+) True AMCG00021882
AMCG00021881 mRNA upstream 787659 35028870 ~ 35077090 (+) True AMCG00021881
AMCG00021893 mRNA downstream 96802 35984055 ~ 36013655 (+) True AMCG00021893
AMCG00021899 mRNA downstream 578533 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021900 mRNA downstream 762979 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021911 mRNA downstream 2233071 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021910 mRNA downstream 2249869 38137122 ~ 38142159 (+) True AMCG00021910
TU111226 other upstream 601212 35211133 ~ 35263537 (+) True G89142
TU111156 other upstream 823461 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other upstream 823461 35037839 ~ 35041288 (+) False AMCG00021881
TU110433 other upstream 5470528 30267402 ~ 30394221 (+) False AMCG00021803
TU111415 other downstream 77318 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 77318 35964571 ~ 35967384 (+) True G89299
TU111747 other downstream 2234004 38121257 ~ 38151049 (+) True G89578
TU111748 other downstream 2234004 38121257 ~ 38151049 (+) False G89578
TU111805 other downstream 2930619 38817872 ~ 38822685 (+) True G89632

Expression Profile