RNA id: TU111584


Basic Information

Item Value
RNA id TU111584
length 933
lncRNA type sense_over
GC content 0.47
exon number 3
gene id AMCG00021896
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36524509 ~ 36537718 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTAAGTGATTCGTAGTGGGTCTAACAAAGTGGGAGGATATTGCTTGACTGCTGTCCTCATCATGGCTTCCAGTCCGCAAATGCATTTTCGGAGAAATACGGAGAATAGACAGGCGGACAGTCAAACTCATCTTAAAACAGAGGCGGACAGAATAAAGCTGTATTTCAGAAATGTGGTACTGGGTGTTTCTGTGGGCCCTGTTCTCTTCGATGTTTGTGCACGGGGCAGTGGGAGTGCTGATGTTTATCATGCTGCAGAGACACAAGCAAGGCCGGCTCATCACCTTCATCCTGATCAGTGCTGGATTCTTGGCCTCTCTCACTGGTGGGGTCATCACaaGTGCTGCAGTAGCTGGAGTGTATAGAGTAGCAGGGAAGGACATGGCCCCTATGGAAGCCCTGGTTTTCGGTGTTGGACAGACCGTGCTTACCATCCTCATCTCTGTCTCAAGGATTCTTGCCACACTCTGAAGAAGCAGCCTCTGCCCTCAACATGAGATGGGCTGAACAACAAGCATGCTCCTGGGCTTTGTATCAGAGCCTGCAGAAGACTTGATGGGAGCAGCCAAAAGGTGATGCTGATTGGAGGACAGTGTGGGTTTTGGAGTAGGACAGAATCCTGGCCTAGGTCAGCATTAACAGAGCACCCAAACTGGTGTTCAAGCTGTTACACTAGTGCACCTTATGTGCCTCTGTCACAAGCAAGGTGCAAGAGACACTATGTTACAGCATCACGAaggtttccatttaaaaaataaattaaaaaattaaaaatacttgcACAGTTAATGGTCAGCAGTAAGCCTGGCTAACAAAAGGACGAGTAAGCGCTGTAAAGGACATACCTGTATACATGGACTGCAAGGACTCTTCTCTGATCAGTGTCATGTGCCAATGTGACTttctaaatgtgtaaataaactgAACTTTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111576 lncRNA downstream 12578 36511599 ~ 36511931 (-) True G89431
TU111572 lncRNA downstream 22681 36498194 ~ 36501828 (-) True G89428
TU111511 lncRNA downstream 539248 35967119 ~ 35985261 (-) True G89373
TU111491 lncRNA downstream 630795 35852036 ~ 35893714 (-) True G89359
TU111375 lncRNA downstream 706888 35817366 ~ 35817621 (-) True G89272
TU111707 lncRNA upstream 720832 37258543 ~ 37258818 (-) True G89539
TU111717 lncRNA upstream 929070 37466781 ~ 37467591 (-) True G89549
TU111721 lncRNA upstream 1027263 37564974 ~ 37565215 (-) True G89553
TU111727 lncRNA upstream 1076686 37614397 ~ 37614596 (-) True G89559
TU111730 lncRNA upstream 1223106 37760817 ~ 37761021 (-) True G89562
AMCG00021895 mRNA downstream 106764 36414879 ~ 36417745 (-) True AMCG00021895
AMCG00021892 mRNA downstream 465959 36054974 ~ 36058550 (-) True AMCG00021892
AMCG00021891 mRNA downstream 494074 36027280 ~ 36030435 (-) True AMCG00021891
AMCG00021887 mRNA downstream 574218 35928591 ~ 35950291 (-) True AMCG00021887
AMCG00021890 mRNA downstream 725402 35798190 ~ 35799107 (-) True AMCG00021890
AMCG00021898 mRNA upstream 84820 36622531 ~ 36625236 (-) True AMCG00021898
AMCG00021897 mRNA upstream 139395 36677106 ~ 36687637 (-) True AMCG00021897
AMCG00021902 mRNA upstream 298717 36836428 ~ 36845633 (-) True AMCG00021902
AMCG00021901 mRNA upstream 330132 36867843 ~ 36874210 (-) True AMCG00021901
AMCG00021903 mRNA upstream 406322 36944033 ~ 36975116 (-) True AMCG00021903
TU111563 other downstream 86159 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 577525 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 1128738 35375016 ~ 35395771 (-) True G89217
TU111038 other downstream 2144214 34346988 ~ 34380295 (-) False G89004
TU111619 other upstream 140816 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 1723676 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 1857860 38395571 ~ 38397755 (-) True G89611
TU111863 other upstream 2718168 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 2948122 39485833 ~ 39486288 (-) True G89765

Expression Profile