RNA id: AMCG00021897


Basic Information

Item Value
RNA id AMCG00021897
length 2938
RNA type mRNA
GC content 0.37
exon number 2
gene id AMCG00021897
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36677106 ~ 36687642 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTGTATGGCCAAGCGCATTGTATACTGTGTACAATGTGCGCttacttgttttaattgtttttgtttttacgtatatatttatttgttgttttttctcatgaAATGTTTGTCTGTACTCCGTTTTTCTGGTAGTGTTAGAACAgcagtttgtatttttagaGTGTCTCCGCAGTAACTTGGGATCTGTTGTGAATGGTTTTGTGTTTCAGCGAAATGATCGGTAGGGTTTTATACCGAAACTAATTTCTTGAATCTCAGTAACTACCTCTTGGACTTTTAGTTCAACATCATAAATGGGCCTACAgctcaaaacataaaaaaggaaagggtTATACAGTGCTTGCGCTTGGGATAAAATGTGGCAAAGCGTCGGTCTGACAGTGTTGGTCATTATAGCCACCCTGGTGTGCGTGTTGCTATTCATGCTGTTCGGGTGGTATGTGGTGTGGCAGCTATTCTTGTCCAAGTTTAAGTTTCTCCGAGAGCTGGTGGGAGACACTGGATCCCAACAGGGAGACAACGAGCTGTCCGAATCTGAGGCAGAGGGCGATTCGCCCCCAACCCCACGTCACAGACCCAAGACTGCAAGGCAGAGGAAAGCCCCAGTAGAGGAAGCCACATAGGGGGCAAGGCGGCCTGAGACTCTGAACACAACATTCTAGAAGCTAGATATGAACATGACATGGAACATTTGTTAAGGTAGAATTTTAGCATCACCTTTCCAGGCACTGGAATATGTAGGGCATGTTCTCTAATCCCCAGAGTTTCTGTAGCTATCCAGTAGTGTGCTGCTACCTGTGAGATGAGTTACTGTCCATCATGTCATGCTGATATCTGTGTTTCCAGAGCTAAGCTTTGTTTGTGGAATATAAACAACTAATAATCAAGATCATAAAATGGCGTTCAGTATTTAGTCCATGGCAAATCATATTCTAACCAAACTCCCCAGGCTAATGCggtttctcctttttttattaactgtgATATTCCAAATGTTACTCAAATGtgcaatgtaaaatgtaatgcagtgtTTTGCCATTCATAAGTGAGAAACATTTAAGAttgttgaccttgattttgccTTTAGGTCTTGTTAAGGAATGAATGTTGTATCATGACCTCACACTAAAACCAAGATGCACCTCAGGTCATTACAGTTTACTTTTGCATGGCATGAGGTGtgctgctttaattaaaatttaaaagcaaCTGAAGTACAGTtattaaatagattttgaacccagtttgaaaaatgttttgcacatttatgttgtttgtttccCGTTTCTGTTCCCTGTTTGTAGGTGATTTTATATGTaatgctgattttgtttgtttctgtagatGGTCTTTGATCATAGCAAAAACTGTAAACTGTTaggttatgtattattttgcaataattaattgccatcaataaatgtatttcttaaaagatgcattttctttttatcggaatgaaaatataaaagctCCTCTTTATAAGTTCATAACCAAACAAACTTAATAGCTGAGCTATATAATAAACCTAAGGTCTAATACTTTATCCCATTGAAGGTCAAAAGAGCAGTATTTTATAACACAATCTGATTTAAACACAGCATGCCTAAAGGATGGGTGCATTCTTGTAGAAcctattattgctattattatgattgtaatCGCCATCAAGCTATGTGCTAGTAGGTATACCTTCCTGTAACTGATTGTGGAGATAGTTTGTGGCTTTTAAACTGTGCAACTTGACTCTCTTAACTAATTATGTTTACTCCAGATTTATATATAACTGCCAACAACACTCCTTGccgtattattatttacttagcAGTTTCAAGAATAATCATATATTAAAAGCAGGTACAATATAGtaggttataatttaacaaatccatacacatttcagtcatggcataTATACATGTGAAAATGTGGCGGGAAGCAGGGGCGCCATGGCCCCCCCTGAATTAAGCCTGCCCCCTCCCCAGCGGTCCCCCCTAAGATTGCTGTCTGTGCCCCCCCTAGCATGAACAGAACACCCATTACCCCCCCGCTTGTGTGAACCCCTCCCAGTTGAAGCAGAATGGAAAAAATGCAGTaagcaaaacataaatgtcaaacaaaacaaattgcaaagcaaatataaataaataaactcaggACTCTCTGTAACCACaactaaattatattgttatattggtGCTGGCAGACTAAATCCTCCCTACTCaaaccaaataaatgaaaataaactcaattTAACCCTACAAATGAACTtagtgttctttaaaaaaaaagaaatcccaaACAGTAGAAGACTATTACATTCCACTGATAACTCAGGTTTCAACTAATTCATTACCAATATGCTCCCCATTGGTAAAACTTGCACTCACCTGCcccttaaaaaacaatataattggaGGTGCACATACCTTTAATTTTAACCAAAATagctaaataaaatgaaaacaaaataaaacatccatcTGCATGGTGTTATTCATACAGCATTTAACAACATCTTACTTAAACagtaacacaaattaaacaaagtaacTAGTGGTGGTTATAAAAGATGGTTATAATGTGATTTCTCCTCATTACACAgttgttaatgttttcatttattcattcatttatttatcttgtaaatgggcTCATGTTAACTAAAtcatgttcgccttcatactgatgtTCTCTGCGGAGCTGTTGCACAGCAGACTCTGCACATCATTCACattgttcagttgttttttggCTGTTGCTGCTCTGATTATTGTCCTTCATGTTTTTACtctatccatttttttttaattgcaccaGAGTCCTGTTTAATCTGAGTTCGGCAAGACCTCTGGCATACACTCAGATATTTCTAACTGTAATcaataattgtttctgtatgtcgactgctaataaaactttaatttcttcctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111584 lncRNA downstream 139395 36524509 ~ 36537711 (-) True AMCG00021896
TU111576 lncRNA downstream 165175 36511599 ~ 36511931 (-) True G89431
TU111572 lncRNA downstream 175278 36498194 ~ 36501828 (-) True G89428
TU111511 lncRNA downstream 691845 35967119 ~ 35985261 (-) True G89373
TU111491 lncRNA downstream 783392 35852036 ~ 35893714 (-) True G89359
TU111707 lncRNA upstream 570906 37258543 ~ 37258818 (-) True G89539
TU111717 lncRNA upstream 779144 37466781 ~ 37467591 (-) True G89549
TU111721 lncRNA upstream 877337 37564974 ~ 37565215 (-) True G89553
TU111727 lncRNA upstream 926760 37614397 ~ 37614596 (-) True G89559
TU111730 lncRNA upstream 1073180 37760817 ~ 37761021 (-) True G89562
AMCG00021898 mRNA downstream 51870 36622531 ~ 36625236 (-) True AMCG00021898
AMCG00021896 mRNA downstream 139388 36524886 ~ 36537718 (-) False AMCG00021896
AMCG00021895 mRNA downstream 259361 36414879 ~ 36417745 (-) True AMCG00021895
AMCG00021892 mRNA downstream 618556 36054974 ~ 36058550 (-) True AMCG00021892
AMCG00021891 mRNA downstream 646671 36027280 ~ 36030435 (-) True AMCG00021891
AMCG00021902 mRNA upstream 148791 36836428 ~ 36845633 (-) True AMCG00021902
AMCG00021901 mRNA upstream 180206 36867843 ~ 36874210 (-) True AMCG00021901
AMCG00021903 mRNA upstream 256396 36944033 ~ 36975116 (-) True AMCG00021903
AMCG00021904 mRNA upstream 305214 36992851 ~ 36999640 (-) True AMCG00021904
AMCG00021905 mRNA upstream 403561 37091198 ~ 37171379 (-) True AMCG00021905
TU111563 other downstream 238756 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 730122 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 1281335 35375016 ~ 35395771 (-) True G89217
TU111038 other downstream 2296811 34346988 ~ 34380295 (-) False G89004
TU111771 other upstream 1573750 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 1707934 38395571 ~ 38397755 (-) True G89611
TU111863 other upstream 2568242 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 2798196 39485833 ~ 39486288 (-) True G89765

Expression Profile