RNA id: AMCG00021900


Basic Information

Item Value
RNA id AMCG00021900
length 1973
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00021900
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36650232 ~ 36659244 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacagGTAATGACCCCAACACGAGTGGGACAGACTTATGCCTGTGAATCTTCCTCCAGGTACCAGAAAGATGTCTATGATGTTCCACCCACAAGACCCCAAGGGGTGTATGACATCCCTCCAGCCAAACTGAAAGGTTCAATGTTTCCTGGACAACTAGGTGAACCTCGAGCTCAAGGCGTGTATGATATCCCACCAACTAATCAAGGGATATACTCAATTCCCCCATCTGCCTGtagagaaagggagggaaacTATGATTTCCCACCACCCATGAAACTTAAACCCGAAGGAGTTTACGATGTACCTCCCACTACCATTGGAAAATCTCCTGAAAAGTCCAATTACGATTTTCCTCCTAGTTCTGAACTAGCGTCACAAGGCAACAATGGAATCTATGACATCCCACCCTCTCAGCTTCTTGGGAATCAACTTAGCTCCCAGACAGATGTGTACGATATTCCACGAGGGATGCAGCCCGCAGGGAAACCAAGGGCTCCCACAGACAGGTCTACAGAGAGGGGAAAAGGGGTGTATGACATCCAACCACAGGTCTCCCAAGATTCCAAAGCTGTGCAGGACATAACAGATGGAATCAACCGGTTGTCCTTCTCCAGCACCGGCAGCACGAGAAGCAATATGTCCACCTCCTCCACAACCTCCAAAGAGTCCTGTCTCTCCACCTCCCCCCTGCAGGAGATCAAGCTCCTCCTGGACCTGGACACAGCCATTCAAAGGATTTCTTGGCTTTATCAGGTAGTGGAGTCCTCCATTGCAGCCCTCATGGGCCACTTAGCTCCAAACTGGAGGTCTTATGACTATATGGAGAAGCATGTGAATGAGATTCACACGGCAGTTGACAAGGTGATGCAAGCCCTGACAGACTTTATGCACTTCAGCAAAGGGGCTGCAGCAAACGCCTCAGGACTCACTGACCTGACTTTATACAACAAGCTGAAAAAGCATCTGCAGAGATTGGATGACTCCAACCAGATCCTTTCACAAACCAGACAGGCTCTAGATGTCTGTAATTGGTCCTTAAATATCTTGGTCATCAACAAGGCCCAGAACAAGTGTGACAGTCTGGAACGTTTCATTATGGTGTCAAGGACAGTCCCAGATGATGTCAAGCAACTAGCATCTGCAATAAGCACAAATGCTGAGCTCCTGTTTAAGCGCGTGCCCAATGGATCTTTTTCCACAGCCATCAGTGAGCAAAGTGGTTCAACagactatatatataacagtcCACAATCCCATGTTGACCAGGAAGAGAAGGACACCCTCCAAAGCAAGACTTTTCCTAGCCGGCCTAATGTTGACGATAAGGCAAATATTAACAGCAGTGAGAAAGGAATAAAGAGCTGGATGGAGGATTATGATTATGTACACCTGCAGGGTAAGGAGGAATTTGAGAGGCAGCAGAAAGAACTgctagaaaaagaaaatatcatcAAGCAGAACAAGATACAACTGGAGCAAGAGCAGAAAGAGGTCATTAAGCCTGTAGAAAATGACATTTCCACCTGGAGTGGGCCTCAGAATGTCCCTCATGCAAACGGAGGGCTTTGTACCAAGGACAAGCAGCTACTATTCTTCTACTCTGAGCAGTGCGAGACTCATTTTGTCACCCTGCTGAATGCCATAGATGCCTTTTTCAGCTGCATCAGTGTGGGACAGCCTCCTCGGATCTTTGTGGCTCACAGCAAGTTTGTCATTCTGAGTGCACACAAACTGGTGTTCATAGGGGATACCCTATCAAGACAGGCTGCCACTTTGGAGGTTCGGAATAAAGTGATGAACTGCAGTAACATCCTCTGTGAGCTCCTAAAGACCATTGTGTCAGCTACCAAAATAGCAGCCCTTCACTATCCCAGCACAGCAGCCGTGCAAGAAATGGTGGACCGTGTAACGGAACTTTCGCATCACGCACAACAGTTTAAAGTACAGCTTCTGCAGATGGCGTCTTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111595 lncRNA upstream 34686 36595719 ~ 36615546 (+) True G89448
TU111590 lncRNA upstream 87819 36562007 ~ 36562413 (+) True G89443
TU111575 lncRNA upstream 138732 36511189 ~ 36511500 (+) True G89430
TU111470 lncRNA upstream 234391 36414644 ~ 36415841 (+) True G89342
TU111455 lncRNA upstream 401811 36247059 ~ 36248421 (+) True G89329
TU111620 lncRNA downstream 66391 36724112 ~ 36725391 (+) True G89465
TU111636 lncRNA downstream 190289 36848010 ~ 36855391 (+) True G89480
TU111678 lncRNA downstream 350753 37008474 ~ 37010542 (+) True G89516
TU111691 lncRNA downstream 459831 37117552 ~ 37121582 (+) False G89527
TU111692 lncRNA downstream 459831 37117552 ~ 37208252 (+) True G89527
AMCG00021899 mRNA upstream 148404 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021893 mRNA upstream 636577 35984055 ~ 36013655 (+) True AMCG00021893
AMCG00021894 mRNA upstream 762979 35864749 ~ 35887253 (+) True AMCG00021894
AMCG00021886 mRNA upstream 1056894 35579959 ~ 35593338 (+) True AMCG00021886
AMCG00021884 mRNA upstream 1432101 35200245 ~ 35218131 (+) True AMCG00021884
AMCG00021911 mRNA downstream 1462603 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021910 mRNA downstream 1479401 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021912 mRNA downstream 1738085 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021914 mRNA downstream 2198105 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021915 mRNA downstream 2700997 39358718 ~ 39369622 (+) True AMCG00021915
TU111415 other upstream 682848 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 682848 35964571 ~ 35967384 (+) True G89299
TU111226 other upstream 1386695 35211133 ~ 35263537 (+) True G89142
TU111156 other upstream 1608944 34926553 ~ 35041288 (+) False AMCG00021881
TU111747 other downstream 1463536 38121257 ~ 38151049 (+) True G89578
TU111748 other downstream 1463536 38121257 ~ 38151049 (+) False G89578
TU111805 other downstream 2160151 38817872 ~ 38822685 (+) True G89632
TU111914 other downstream 2742803 39400524 ~ 39408261 (+) True G89728

Expression Profile