RNA id: AMCG00021903


Basic Information

Item Value
RNA id AMCG00021903
length 1638
RNA type mRNA
GC content 0.47
exon number 14
gene id AMCG00021903
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36944033 ~ 36975116 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGCACTAGTGCAGTGGACAGAAAGTGTGGGCCTGACGCTGGTTAACAGAGACCTGACCTCCATGCAGCTGAAGACCCCTGGTGGACAAATCCTCACATTTTATATCCTGCAGATTTTCCCATTTACGTCAGAGAGCAAGAGAATGGGGATCATTGTTAGGGAAGAGGATACTGgtgacatcacattttatatgaaaGGGGCTGATGTAGCAATGGCAAGTATTGTACAATACAACGACTGGCTGGAAGAAGAGtgtgGAAACATGGCAAGAGAAGGGCTACGCACTCTAGTGGTAGCAAAAAAGCACTTATCAGAAGAACAGTACCAGGACTTTGAGAATCGGTATAACCAGGCTAAGCTGAGCATACATGACCGTAGTCTGAAAGTGGCAGCTGTTGTGGAGAGTTTAGAGCGAGAGATGGAACTTTTGTGTCTAACTGGAGTGGAGGACCAGTTACAGGCTGATGTGAGGCCTACCCTGGAACTGCTCAGAAATGCAGGAATAAAGATATGGATGTTAACAGGAGATAAACTGGAAACTGCGACTTGCATTGCAAAAAGCTCACATTTGGTATCCAGAAGCCAGGATATTCATATCTTCAGACCGGTATCAAACAGAGGGGAGGCCCATCTGGAGTTGAATGCCTTCAGAAGAAAACACGATTGTGCGCTCGTTATTTCAGGAGACTCGCTCGAGGTCTGCCTAAAGTACTATGAGCATGAGTTTGTGGAGTTGGCATGCCAGTGCCCAGCTGTGGTGTGCTGCCGCTGCTCTCCTACACAGAAAGCCCAGATAGTGAAGCTGCTGCAGCAGCACACAGGCAAGCGCACCTGTGCCATAGGTGACGGAGGAAATGATGTTAGTATGATCCAAGCTGCTGACTGTGGGATTGGGATTGAAGGAAAGgAAGGAAAACAAGCCTCACTGGCAGCAGATTTTTCTATCTCACAGTTCAAGCACATTGGCAGATTGCTGATGGTTCATGGACGCAACAGTTACAAGCGCTCAGCGGCCCTTGGGCAGTTTGTCATGCACAGGGGCCTGATCATTTCCACAATGCAGgcagtgttttcatctgtattttattttgcctcaGTCCCCTTGTATCAGGGGTTCCTCATGGTGGGATATGCAACGATATACACCATGTTCCCAGTATTTTCCTTGGTTTTAGACCAGGATGTCAAGCCAGAGACTGCACTTTTATACCCTGAACTTTACAAGGATCTCACAAAGGGTCGTTCATTATCTTTTAAGACATTCCTGATATGGGTTCTGATAAGTGTGTACCAAgGTGGTATTCTAATGTATGGTGCTCTGGTTCTCTTTGAGTCAGAGTTTGTGCATGTGGTAGCCATCTCCTTCACAGCGCTCATTCTGACAGAGCTGCTGATGGTTGCACTGACTATCAGGACGTGGCACTGGTTGATGATTGTGGGTGAATTCCTCAGTCTTGGCTGCTATGTGGCCTCCCTTGCCTTTCTTAATGAGTATTTTGaTGTTGCCTTTATCGCAACCGTGGCATTCCTATGGAAAGTGTCAGCGATAACTGTTGTGAGCTGTCTTCCACTTTACATTATCAAATACTTGAAACGCAAGTTCTCCCCGCCGAGTTACTCCAAGCTTACCTcatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111584 lncRNA downstream 406322 36524509 ~ 36537711 (-) True AMCG00021896
TU111576 lncRNA downstream 432102 36511599 ~ 36511931 (-) True G89431
TU111572 lncRNA downstream 442205 36498194 ~ 36501828 (-) True G89428
TU111511 lncRNA downstream 958772 35967119 ~ 35985261 (-) True G89373
TU111491 lncRNA downstream 1050319 35852036 ~ 35893714 (-) True G89359
TU111707 lncRNA upstream 283427 37258543 ~ 37258818 (-) True G89539
TU111717 lncRNA upstream 491665 37466781 ~ 37467591 (-) True G89549
TU111721 lncRNA upstream 589858 37564974 ~ 37565215 (-) True G89553
TU111727 lncRNA upstream 639281 37614397 ~ 37614596 (-) True G89559
TU111730 lncRNA upstream 785701 37760817 ~ 37761021 (-) True G89562
AMCG00021901 mRNA downstream 69823 36867843 ~ 36874210 (-) True AMCG00021901
AMCG00021902 mRNA downstream 98400 36836428 ~ 36845633 (-) True AMCG00021902
AMCG00021897 mRNA downstream 256396 36677106 ~ 36687637 (-) True AMCG00021897
AMCG00021898 mRNA downstream 318797 36622531 ~ 36625236 (-) True AMCG00021898
AMCG00021896 mRNA downstream 406315 36524886 ~ 36537718 (-) False AMCG00021896
AMCG00021904 mRNA upstream 17735 36992851 ~ 36999640 (-) True AMCG00021904
AMCG00021905 mRNA upstream 116082 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021906 mRNA upstream 237500 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021907 mRNA upstream 982639 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021909 mRNA upstream 1204964 38180080 ~ 38224604 (-) True AMCG00021909
TU111619 other downstream 256391 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 505683 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 997049 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 1548262 35375016 ~ 35395771 (-) True G89217
TU111040 other downstream 2592908 34346988 ~ 34351125 (-) True G89004
TU111771 other upstream 1286271 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 1420455 38395571 ~ 38397755 (-) True G89611
TU111863 other upstream 2280763 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 2510717 39485833 ~ 39486288 (-) True G89765

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028008 True 3387 mRNA 0.50 28 NC_007130.7 22085925 ~ 22177248 (+)