RNA id: AMCG00021906


Basic Information

Item Value
RNA id AMCG00021906
length 5882
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00021906
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 37212616 ~ 37234841 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGCGCCGCAAGCAAGCAAAGCCACAGCATCTCAAGTCGGACGAGGAGCCAACACTAGCTGAGGTAGTTTCTGAAAATGcaACCCCAGGAGAAGGAGTGGATGATGCAGACAGTGGAAATGAGAGTCGCAGTGGAAGCGAAGAAACTCATGTGTGTGAAAAGTGCTGCGCCGAGTTCTTCAAGTGGACAGACTTCTTGGAACACCAGAAAAACTGTACCAAGAACCCCATGGTGCTGATTGTGAATGAGGACGAAGCAGCACCTGATTCCCAAGAATATCCTTCTGAGCCTTCCCCAGCACCAAGCTGCCCCAGTGACCCAGCTGACAGTGAGGACGCGGAAGAGAGCTGCACACCAACAGATGGAAATGAGAGCTCAGAGGTAGTAACTAGCACAGAGAAGGAGGACGAACCCATGGAGATGGAACAGTCTCCTGAAAAAGCAGCTGATCCTGAGCCAGTTCCATCAGAACCAGCTCTTTCTCTACCTCAGATTCCTAACCCATCTTCCATGACGAACTATAATATGCCAAACACTAATGTGACTTTGGAGACTTTGCATAGCACAAGGGTAGCGGTGGCACAGTTCTCACAGAGCCCCCGCTCAGGTGCAAATACAGGGGTGACCACCATGGCCATTCCCATGATTCTCGATCAGCTGATGGccctacagcagcagcagattcaTCAGTTGCAGCTAATCGAACAGATCCGAAGCCAGGTGGCAATGATGAACCGCCAACCGATGCAACCAACACTCAACCCTGCTGCTGCTTCCCAAGGTCCATCTTCAGTTACAGCCTCCAACCAGCTGCAGCTCCAGGGCTTCATTGTACCACCAGTTCATCAGCTACCAGCTACAGTGCCCTCTGCTGTAAATGGGCAGGCCTCTGGCGCACTGCCGTCCACCCTGGAGGGATCTCAGCAACATATATCCCAACCTGTCTGTGTGCCAGCCAATCCAGGACTACCCAGCAGCACTTCTGTCTCAGCTGAGTGCAACCTTCCCCCTTCCAGTTGCAATGTGGTCACATCTTTACTGCCTCCCTGCCCTATCACAAACACGAACAATAGCTGTACCCAGCCACGGAATGCTTCAACCCCTCCATCAATTGGACACGGAAGTCTCCTCAGCCCATCTTCCAACTTGCCACTACTACCTCAGAGTTCCTCAAGTAGTGTCATCTTCCCCAACCCCTTAGTTAGCATTGCTGCCACTGCAAACGCACTGGATCCACTGTCTGCGCTGATGAAGCACCGTAAAGGGAAGCCACCCAACGTGTCCGTCTTTGACACTAAACCCAGCTCAGAAGACCCCTTTTTTAAGCATAAATGTAGGTTCTGCGCCAAGGTGTTTGGGAGCGACAGTGCTCTGCAGATTCACCTGCGCTCTCATACTGGAGAGAGGCCCttcaaatgtaacatttgtgGAAACCGCTTTTCCACCAAGGGAAATCTGAAGGTTCATTTTCAAAGGCATAAAGAGAAGTATCCTCACATCCAGATGAACCCATACCCAGTACCAGAATACCTCGACAATGTGCCCACTAGCTCAGGCATCCCCTATGGAATGTCTTTGCCTCCTGAAAAGCCAGTGACAACATGGTTGGACAGTAAGCCTGTTTTACCTACGGTTTCCACCTCTGTGGGGCTCCAGCTTCCTCCTACTCTTCCTAGTATGGGTACCTACAATGATTCTCCAAGTATTACTCCTTTAAGCAGAGCCAAGCCCCCTCTTCGGGTTCAGCACTCGTGTCCCATCTGCCAGAAGAAATTTACTAACGCTGTTGTCTTGCAGCAACACATTCGTATGCACATGGGAGGGCAGATTCCCAACACACCTTTGCCAGAGGGCTTCCAGGACAGCATGGACACTGACCTCTCCTTCGATGAAAAGAGTATTGATGCCATGAGCAACTATGATGATGACCTTATGGATGAAAATTCCATGGAAGAAGAAGCAGAGATCAAGGAAGGTGAAAATGACCCTTCCAAACCCTTGATGTCCTATTCCAGCTTGTCCCCAAATTCACCACCTTCTGTAATATCCAGCATTGCCGCCCTGgaaaaccaaatgaaaatgaTCGACTCCACAATCAGCATGCAGCACTCTTTTGGACTGAAGTCAATTGAGAATGGGTGCATGGAGAGTGATCACTTGACAAATGACTCTTCCTCAGCTGTGGGGGACCTAGAGAGCCAGAGCGCAGGAAGCCCAGCGATGTCAGAATCATCCAACTCCATGCAGGCCCTGTCCCCTGCTCACAGCAACACAGAGAGCCATCGTTCCAAGTCTCCCAGCGCCAACAATCCAGAAGAGGCCCAAGATGCAGCAGCAACAGTAAAGTCTGAAAAGTCGGAAACTCCATCCCCTGCACTTGAAAATGGAGGCCCGCTTGATCTGACAGCCACCCAGACCCATCCTGGCAGACCCATCATCAAAGAGGAATCTCCTTTCAGCATGCTGTTCCTCAGCCGAGAACGTGGTCCGAGCCAAAGTACTACTAGCCTGGTTACCAGCACAGCACCCAGCATGATCAAAATTGAAGTGAACGGGCACAGCAAGCCGATGTCCATAAGCGATGGTCCACACCTCCCGGTTGGTATCCAGGTTCCTGCTGTGCCCCAGACGGCGATGAGTCCAGGTATTACCCCCATGCTGGCACCGCCACCACCTCGCCGGACGCCCAAGCAACACAACTGCCACTCCTGTGGAAAGAACTTCTCCTCAGCAAGCGCTCTGCAGATCCATGAACGCACTCACACGGGTGAAAAACCTTTTGGTTGCACAATCTGTGGTAGAGCTTTTACCACTAAAGGGAATCTGAAGGTTCACATGGGCACCCACATGTGGAACAATGCGCCCGCCAGACGGGGACGACGTCTTTCAGTAGAGAACCCCATGGCACTGTTGGGGGGCGATGCCATGAAGTTCACCGAGATGTTTCAGAAGGACCTAGCTGCCCGAGCTATGAATGTGGACCCCAGTTTCTGGAACCAATATGCTGCAGCCATCACCAATGGCCTGGCCATGAAGAACAATGAGATCTCGGTCATACAAAATGGGGGAATCCCTCAGCTCCCTGTCAGTCTAGGTGGGGGTGGTATCCCATCTTTAAACAGCTTGTCTAGTGGAATGGACAGGGCCCACACAGGAAACAGCCCACCCATGACTGGTTTAGAAAAGACAAGCATAGATGTCGGAGCAAATCGTGCATTTTCTAGGTTTCTTGAAGACAACAAAGAAATCGGTATCAACTGAAAGACTGCTCTTGATGCAAAAGCAACTGTTTGATCAGTTGGAACTATAACATTTATGTACTATATTATGTAcagattcattttttctttgtttttttctggcaACTGTAGTGTTAGAGATTGGTCTATCTTACCTTACTTTTTGATTTATTGCTACTTTACTCATACCAAGAATACATTGTTTCTTGATTGAGATACAGTAGTCTTGCAAAAATTGGCATGGTACATTTGGTTTCTATCAGTacatttgactgtttttggggaacaaaacattataaagaaaaaataacattttacagtgtTGAGCAAGCCTCTGATTTGATctgtcacactgacacacactggtTTACTCCTTGTGTGGGTATAAAGAGACTAGCCTTGATCTAGTGTTAGTCACTTTGCAGTTACTGTATGCTCTAAGTGAAAAGGGCCTTGAATTTATGAGATTAAAGTTAGTGCTCAcctaatattttttcttcacatgaAGTAAAAACTTGaacatgtttgaaatattttaatctgtACATTTAGTGCCCCAACATTGTCTTATATTAATGTCCAGTGTGTTTAGTATTTataatattggaaaaaaaatgcgggtaaaagaaaatatatttaatagccCCAATGTTTTATTGATCCTTTTTCTAAACTACAGactacaaatataaatgtttctttcaataaagacaaaaaagtcattttatctgaacaaaacaaaaaaacattgtttagttttatttgaaagtCTAGCATGATGATTTTGTGCCATTATGGTACATAGTAGAAATTGAGACTCCTTTAGCTGCTATTTTGAAAATTGTGCTATTACTAGACAACTTGTTCAGAAATTAAACTGTtgtctgaaagaaaaagaaaaaaattacagacaaatcttaaataaacaaatgtatgcatattttttatgaaatatagaGTTTAAACATAAAGTTGATTTTATAATTTGAGGGGAACTGTTATGGTTATGTGtctgcactttttaaaatacaaaggtTTGTCTGTAATTTATGTTATTCCTTGAGAGAACtacacaattttgttttaaattgcttcATAGTTTGTGCTTTTGGAAACAAAATCCATGCTTCACACCATCAAATTAATCTTCCAGATGCAGACTTTTATGTCACTCTGAATGTGACAGCTATACACCTCCTGGGGAGACATTTCTGTcctctacaaaacaaaaataaagagaaactaACATTTGACGTCTTTCGTAAATTTGTTCCTTTAGTTCAATGTAGGAGAAGAGTGTTGATATGCTGGAGCTTTGCTTTCCATACAAAAAAAGGGATGTTTTCTATTTACATAGATGTTGTTTATGacagaaatgcaaagaaaaacatttgccGTTAATCAATTTATGAATATAAGATTTCATTCCCTACTCattgctgctttttattttttaatattattatttgtattgctgtaaaGCACAGTGCTCTTTgatcataaaaaacaacatattaggTGTGgtggttgttttaaaataatcacaataatatgGATAGTTTTATCTCAAAGCTATGATGTGAGGTTGGGGTGTGAGgtttttttaaacttgaactaacagtgtatattttgtgtactacctcatttaattttaatttttaatttttatttttcatgaaagCATGGTGGAATTTAAAGATCATGGTAACTTCCTTTGTTACAAACTGTACAACTGAACCATGATATTGTGCAACATCAAAGAGTAGTTAAATGCTCCTTgtctctttaaaatgaaaaaaacaagaaagacacttttttccccctctggctgggacatgaaaatgtatttggtatGGAAGATTGTTCTTGCATATCTCACCATTTTACTGTAAGGGGCTGACTTGCTTCAGCCTTCATatgattaaatgaaaagcagatatagatatataaaaacaaaacgattGAAGACTTTTACAGCTGTATATTCTTACTGGGTGTAAAGGACTATAAACAGATTGTTTTCAGCAATTACCATGTGTCATCCTGGtgtatttacacacatttctgtttctttttggcACCACGTGTTGGAGAGATTTATAacttaatggacaaaaaatatCAAGGTGGCTTAATATTGCTCTATTTCAGCagctgaatgttttttaatttatttttttccttgtgtgtgtgttttatttgtttgtttttgttagttacTTGGTACCATGTAGTGTTAATCTCCTCTCctccagaataaaataaaaaagtgattaaGTTACTGTAAATAGGATGGTTGCTGAAGGTAAAGTCAAGACTGAACCCATTTTGTATTCGAGGAATTGGCTGTTCCTCTCTGCATGGTAAAGAAAGACACTATTTTTATACTGTGATACCATGTAGGGCTGGAAGACCACCTCGAACCAGCTGGGAATTGATACCTAGAtccaatattttttattagtataCCTTGTTGGCTTGACACATCTACTGATTGAAATGGATGTCTTAGTCTAGGTTACTATTTTTGtcatatggaaataaataaaatccaggatgtaataatacaacaaaGGGTTTGGAATTTTTCAGTAggtttgtttaatgaaaaagtataacaagaaaagtattttatttcaa

Function

GO: NA

KEGG:

id description
K19871 SALL; sal-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111584 lncRNA downstream 674905 36524509 ~ 36537711 (-) True AMCG00021896
TU111576 lncRNA downstream 700685 36511599 ~ 36511931 (-) True G89431
TU111572 lncRNA downstream 710788 36498194 ~ 36501828 (-) True G89428
TU111511 lncRNA downstream 1227355 35967119 ~ 35985261 (-) True G89373
TU111491 lncRNA downstream 1318902 35852036 ~ 35893714 (-) True G89359
TU111707 lncRNA upstream 23702 37258543 ~ 37258818 (-) True G89539
TU111717 lncRNA upstream 231940 37466781 ~ 37467591 (-) True G89549
TU111721 lncRNA upstream 330133 37564974 ~ 37565215 (-) True G89553
TU111727 lncRNA upstream 379556 37614397 ~ 37614596 (-) True G89559
TU111730 lncRNA upstream 525976 37760817 ~ 37761021 (-) True G89562
AMCG00021905 mRNA downstream 41237 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021904 mRNA downstream 212976 36992851 ~ 36999640 (-) True AMCG00021904
AMCG00021903 mRNA downstream 237500 36944033 ~ 36975116 (-) True AMCG00021903
AMCG00021901 mRNA downstream 338406 36867843 ~ 36874210 (-) True AMCG00021901
AMCG00021902 mRNA downstream 366983 36836428 ~ 36845633 (-) True AMCG00021902
AMCG00021907 mRNA upstream 722914 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021909 mRNA upstream 945239 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021908 mRNA upstream 1003297 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021913 mRNA upstream 1584570 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021921 mRNA upstream 1703766 38938607 ~ 38945501 (-) True AMCG00021921
TU111619 other downstream 524974 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 774266 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 1265632 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 1816845 35375016 ~ 35395771 (-) True G89217
TU111040 other downstream 2861491 34346988 ~ 34351125 (-) True G89004
TU111771 other upstream 1026546 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 1160730 38395571 ~ 38397755 (-) True G89611
TU111863 other upstream 2021038 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 2250992 39485833 ~ 39486288 (-) True G89765

Expression Profile