RNA id: AMCG00021908



Basic Information


Item Value
RNA id AMCG00021908
length 888
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00021908
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38238138 ~ 38245037 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gcCAAGGGAGTTCCCTTGTTTCCCTGTTTGGATTGCAGCTGTGTGTTCAAAAAACTTGGCAGTCTTAATGCACACATTAGCAAGATGCACATTTCCATCATAGAAGCTCCACAGAATTCTCAGAGAAAGTCAAACCACCTATATCCTCTTCCAATTGTACTTCATAACAGGGTAAGTATGCACGCAGACTTCACAGATGTTTCTCTCTTCTCTGAGCAGCAGCATGATGGAACAGTTTCAGGGCACCAAGGTCCTGGGACAGAGGGCACAGAAGGTGTGACAGATGTCATCCAGCAGCTCCTGGAACTGTCTGAGCAGGTTACGGGAGAGAACGCACAGGCTGCACAGCCAGTGCAGGCCATTGGTATAGAAGCAGGGATCAACCAGGACATCTTACAGCAAGCCTTGGAGAACAGTGGCCTGAGTGCCATACCAGTTCAATCCCATGCCCAGAACACTGCAGTAGCCAGGGCTTCTGGAACACAGAGCCAGGCCCAGGAAAACCCTCTATGCCCCCCTGCTTCTGACCAACTGGACACCAGTAAGGAGCCCAGCCCAGACAAAGTcatcaggaaagaaaagaaaagtgtttaCAAAAAGCCCATGCAAATGCCAgGTTCCATTCGTGAAGAAAATGGTATTAGGTGGCACGTGTGTCCTTACTGCTCCAAGGAATTCAAGAAGCCTAGCGACCTGGTGCGGCACATCCGCATTCACACACACGAGAAGCCTTTCAAGTGCAAGCAGTGCTTCCGTGCCTTCGCTGTCAAGAGCACACTCACAGCTCACATGAAGACCCACACTGGCATCAAGGCCTTCAAATGCCAGTACTGCATGAAGTGCTTCTCCACGTCCGGCAGCATGAAGGTCCACATGCGTCTTCATACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111759 lncRNA downstream 83017 38154760 ~ 38155121 (-) True G89588
TU111758 lncRNA downstream 84625 38153228 ~ 38153513 (-) True G89587
TU111754 lncRNA downstream 87088 38135260 ~ 38151050 (-) True G89584
TU111738 lncRNA downstream 257724 37980089 ~ 37980414 (-) True G89570
TU111735 lncRNA downstream 295458 37942347 ~ 37942680 (-) True G89567
TU111782 lncRNA upstream 104186 38349223 ~ 38349555 (-) True G89609
TU111785 lncRNA upstream 167010 38412047 ~ 38414262 (-) True G89612
TU111790 lncRNA upstream 176696 38421733 ~ 38422676 (-) True G89617
TU111791 lncRNA upstream 177663 38422700 ~ 38425440 (-) True G89618
TU111798 lncRNA upstream 246298 38491335 ~ 38491585 (-) True G89625
AMCG00021909 mRNA downstream 13534 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021907 mRNA downstream 279605 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021906 mRNA downstream 1003297 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021905 mRNA downstream 1066759 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021904 mRNA downstream 1238498 36992851 ~ 36999640 (-) True AMCG00021904
AMCG00021913 mRNA upstream 574374 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021921 mRNA upstream 693570 38938607 ~ 38945501 (-) True AMCG00021921
AMCG00021920 mRNA upstream 799748 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021919 mRNA upstream 945861 39190898 ~ 39192682 (-) True AMCG00021919
AMCG00021917 mRNA upstream 963978 39209015 ~ 39234436 (-) True AMCG00021917
TU111619 other downstream 1550496 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 1799788 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 2291154 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 2842367 35375016 ~ 35395771 (-) True G89217
TU111040 other downstream 3887013 34346988 ~ 34351125 (-) True G89004
TU111771 other upstream 16350 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 150534 38395571 ~ 38397755 (-) True G89611
TU111863 other upstream 1010842 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 1240796 39485833 ~ 39486288 (-) True G89765

Expression Profile