RNA id: AMCG00021909


Basic Information

Item Value
RNA id AMCG00021909
length 3104
RNA type mRNA
GC content 0.49
exon number 16
gene id AMCG00021909
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38180080 ~ 38224604 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTCCGACCCTTCCCATGCCCCCACTGTGAGAAGATCTTCCGTACCTCAGGACACAGAAAAACCCACATAGCCTCCCACTTCAAGAGCATGCAGATGAAGAAGCAGAAATACCCCCGAAAACCCCAGAAAGTCAGAGTAGTGAAGAACAATCTCCCAATGCCAGACATCCCTCTTCAGGAGCCCATCCTTATCACAGACTTGGgtcttatacaaaaccaaaacccTCGAGGCAGCCTCTCCTTACAACAATATTTAGACATCATTGACAATGACAGGCCTTACAAATGTCCCTATTGCAGTAAAGCATACAAGAAATCCAGTCATCTTAAGCAGCATGTCAGATCACACACAGGAGAGCGGCCATACAAGTGCCTTCAGTGCAGTAAGGGGTTTGCTTCCTCAGGGGTTCTCAAGGCCCACATTCGCACTCATTCCGGACTGAAAGCCTACAAATGCTTGATCTGTGACAGCACCTTCACCACAAGTGGCAGCCTGAGACGTCACATGACCACCCACAGCGACCTTCGACCCTACATGTGTCCTTACTGCCAGAAGACATTCAAGTCCTCCCCaaactgcagaaaacacatgaaaaccCATAAGTACGAGCTAGCCCAACAACtccagcaacagcagcagcagcagccaccaTCCCTGGATGACCCCATGGGCGCCTCAGCGGTCACCACAGAGATGCAGGTGGAAATTGAAGGGGATGAACTCCAGCAGCCCCCCACTGTCAGCACAGAGCAGCAGGCTATGCTGGGTCTTAGCCAGCCGCAGGTTGTAGGAACCCAGCAGACGGAGCTGGAGCAACAGCTGAGTGACCAACCACTGGTGCAGGAAGGATTTACAATAGCGGATGGGTTCAATCAGCAGCCACAGTTCTCCACAGTCCAGCAGTTACAGGATTCAAGCACACTGGAGTCTCAAGCGCTGTCATCCAGTTATCATCAACAGAACTTGCTACAAGTCTCCAGTGCTGAGGTGACCAACGGACAGACTTCCAGGAAGATAATGATGATCATAACAGGAGGTCCTACAGGTGTAAAGGCTTTCAAATGCAATGTCTGTGATGCTTCTTTCACCACCAATGGTAGCCTTAATAGACACATGATAATACACATGAACATGAAGCCCTATAAGTGTCAGATGTGCGACGAGACATTTCGAACTACTCTTCTCTGCAGAAAGCACATGAAGAAAGATCACATTGTAGGAACAAGAGATCTGGGAatagaggaagaagaaaacccTGATAGAGTTGTTCTGAAAAGGAACCGAACAGGAATCATCACTTTCACAGAGGAGCAGACAGCAGAACTCGCCAAGACAGAACCCCGCGAAGATGCCACAGTGTCAGAGAAGGTGCTGGCGCAGTCTGCTGCTGAAAGGGACCGCATCAGTGAGATCAAAGACAAGGCAGTCGAGCTAGAAACTGAACCCAAGTTTGCCAACCGTTGCAACTACTGTCCCAAGAGCTTTAAAAAGCCCAatattattaaaaacaatgtaaaactatTTTACTCCCTCCTTAACTTATCATTGTGTTCACATCATTTTTCTGTACTGATGGGTTCCTGTGTTGTGATGGCTGCAGGTCAGAAGCTCTTTAATTGCCACATGTGCAACACATCCTTTTCCACCAAAGGGAGCCTGAAAGTCCACATGCGGCTGCACACAGGCTCCAAGCCCTTCAAGTGCCCCTTCTGTGACCTTCGCTTCCGGACTTCAGGCCATAGAAAAACCCACATCCAGTGCCACTACAAGCCTTCCTCAGAGTCTAAGAAGCACAAGAAGGCTGTGTTGAGGCAGCCATCAGAACCACTGCCTCCTGTCAATCTGCTCCAAGCCACATCTGGGGACCCCAATGTATTCATCTCCAACAACTCTGTCCTGGCTGGGCAGTTTGAGCAGAACCTCTTGCAACAAAGCATTGTGGGACAGGCCATTCTTCCTGCATCTGTGTCAAGGGGAGATCTCACGGTTTCCCTTACAGAAGCTGGACTTGCCACTCTTGAAGGCATTCATCTTCAGCTTACTCCAACTAATTTAGTGTGTCCCAATGTACAAATCTCTGGCATTGACACGAGCAATATTAACAACATCACATTGCAAATAGATCCAAGTATTTTGCAGCAGACTCTACAGGGCAATCTGCTCTCCCATCAACTAACAGCAGATTCCAGTCTTACCCAACAACCAGGAGCACATCTGATCACAGGTGACTCCACAGTGCCAGCTAATGTTGTGATCCACCCGCTGTTACAGCCAGCAGTGACCTCCGCCAACATGACCATTGCAGGTCTGACTGAGCAAGACACCCATGAGATCACCCTGACCATCAATAATTCTAGCCTCAGTCAAGTACTGGCTCAGGCCACTGGCTCCAACTCCACTCAGTCATCTACAAGTCCTCAGGAGATTACACTGACCATATCAGGTCAAGATATTATCCCACAGCACAATGCAGCTGGAAATGCTGAGATGAATGAGAGCATTAGACTGTCACCCCCTATGAATAACCAGCCAAATGGAGCAACTTTGACTATTGGGAATGATCAGCTTCTACCTCAAAGCCCAAATAATACTGGAATTACAGTAGCAAACAGCCTTCCTTCCTCCACATCCCTGTCACAAGCTCCAGTCACATCCCAGAGTCTTGTGATGTCTTCTGCGGGGATGGGCAGTGATGGCAGTGTGACCCTTACTCTGGCAGACACACAGGGCATGCTATCTGGGAGCCTGGATACTGTCACACTCAACATCACACCTCAGGGGCAACAGTTTCCTGCCATTCTTGGTGACCCCAATCTTCCAGGGCAACAAGGAAATACTTCCCAACAAGTGATATTGGTTAGCCATCCAGCACAGGGCACAGCAGGCGTCCCAGATGACAGTTTTCGGGTCCCAGAGATTACCAGACACATTTCGAAGGATGGTGCAGCAGAGCAGTCCAACCAGCTCAGCCAGTGCTTTTACTGCAATCACGTATTTCTCACTGCCATCATGCTGAGGCGACACTGCAGACAGGCTCATGGCAAGGAAAGGTGCCATGTATGTCGGATCTGTAACAAAGCTTTCAAGAGAGCTACCCACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111759 lncRNA downstream 24959 38154760 ~ 38155121 (-) True G89588
TU111758 lncRNA downstream 26567 38153228 ~ 38153513 (-) True G89587
TU111754 lncRNA downstream 29030 38135260 ~ 38151050 (-) True G89584
TU111738 lncRNA downstream 199666 37980089 ~ 37980414 (-) True G89570
TU111735 lncRNA downstream 237400 37942347 ~ 37942680 (-) True G89567
TU111782 lncRNA upstream 124619 38349223 ~ 38349555 (-) True G89609
TU111785 lncRNA upstream 187443 38412047 ~ 38414262 (-) True G89612
TU111790 lncRNA upstream 197129 38421733 ~ 38422676 (-) True G89617
TU111791 lncRNA upstream 198096 38422700 ~ 38425440 (-) True G89618
TU111798 lncRNA upstream 266731 38491335 ~ 38491585 (-) True G89625
AMCG00021907 mRNA downstream 221547 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021906 mRNA downstream 945239 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021905 mRNA downstream 1008701 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021904 mRNA downstream 1180440 36992851 ~ 36999640 (-) True AMCG00021904
AMCG00021903 mRNA downstream 1204964 36944033 ~ 36975116 (-) True AMCG00021903
AMCG00021908 mRNA upstream 13534 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021913 mRNA upstream 594807 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021921 mRNA upstream 714003 38938607 ~ 38945501 (-) True AMCG00021921
AMCG00021920 mRNA upstream 820181 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021919 mRNA upstream 966294 39190898 ~ 39192682 (-) True AMCG00021919
TU111619 other downstream 1492438 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 1741730 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 2233096 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 2784309 35375016 ~ 35395771 (-) True G89217
TU111040 other downstream 3828955 34346988 ~ 34351125 (-) True G89004
TU111771 other upstream 36783 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 170967 38395571 ~ 38397755 (-) True G89611
TU111863 other upstream 1031275 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 1261229 39485833 ~ 39486288 (-) True G89765

Expression Profile