RNA id: AMCG00021913


Basic Information

Item Value
RNA id AMCG00021913
length 2442
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00021913
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38819411 ~ 38826295 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCACAATTTCAAGCACTCCAGTGGTACACCATTCAGTGTAGCTAAAGCTTATGTGCCGGAGGAGGAGCTCAAGGCTGCAGAAATAGATGAAGAAAACCTACAGGATGATGGACTCTCTCTAGATGCCCAGGACAATGAGTTCCCCTgcaatgaggaggaggaggaaagcaAAGATGCCCCCAGCTATCAGAACTCCCCCCTTAGCACTGCGACTAATCAGGATGCGGGGTATGCATCTCCCCTCAGTGACACCAGTGATAGGCTGGCAGACTTCAAGAGCACTTCCTCGAAAGATGGCCATGAGAAAGAAGAGGCCACTGTGCAGCTTTACAGGCAGAACAGTAAACTGTACGGCTCTGTGTTTACCGGTGCAAGCAAGTTCCGGTGTAAGGACTGCAGTGCAGCGTATGATACACTTGTGGGTCTCACTGTACACATGAATGAGACGGGACACTATCGTGACGACAACAAAGACAAAGAGGAGGACAGCGGAAAGAAATGGTCAAAGCCCAGGAAACGCTCCTTGATGGAGATGGAAGGAAAGGAGGATGCACAGAAAGTGCTTAAGTGTATGTACTGTGGGCATTCCTTTGAGTCCTTGCAAGACCTGAGTGTCCACATgatcaaaacaaagcattacCAGAAAGTGCCTCTTAAAGAACCAGTGCCAGCCCTCACCTCTAAGCTGGTCCCCTCTACCAAAAAACGAGCACTTCAGGACTTGGTTTCCCCCTGCTCCCCAGAGTCTATAAGCAGCACGCCAGGTGTTCCAATGGGTGAGCCTACAAAAGACCAGAAAACAGCTAATCCTTATGTGACGCCAAACAATCGCTATGGCTATCAAAATGGTGCCAGCTACACTTGGCAGTTTGAGGCCCGCAAGGCCCAAATTCTGAAATGCATGGAGTGTGGGAGTTCACATGACACCCTTCAGCAGTTGACAGCTCACATGATGGTCACAGGACATTTTCTTAAAGTGACCAACTCTGCTTCGAAAAAGGGAAAGCAACTGGTCTTTGACCCAGTGGTGGAGGAAAAGATTCAGTCTATCCCTCTGCCTCCCACAACTACGAGGCTGCCCGTGCCGAATATCAAGTCACAGCCAGATTCCCCTGCCCATTCATCTGGTTCTGAGGAGAAGAGAGAGCTAGAAGAGGAGAAGATGGAAGTCATTGAACCACAGAAGAAAATcaaggaggagaaggaagagcCAGGAGAGAAGACCGAGACTAACATGCCGTATAAATATCTCAGAGAGGAGGATTTAGAAGAGACTCCAAAAGGAGGGATAGATATTCTGAAATCCTTGGAAAACACAGTGTCCAGTGCAATCAGCAAGGCCCAAAATGGCACCCCTACCTGGGGGGGTTACCCCAGCATTCATGCCGCTTACCAGCTCCAGGGGTCTGCAAAATCTGCACTGTCCAATGTGCAGAGTGTTCAAGTGCAGCCTTCTTATAACAACAACATGAAAGCGATGTCATGTGACCAGGCATCTGCATTGATCCACTCCCCTGGGAGCACATCACCTCCCATCCACAAAAGCAATGTCTCTGCCATGGAGGAGCTGGTTGAAAAGGTTACGGGGAAAATATCAGCAAAGAAAGAGGAGAAACTTTTGGAAAAAGGGAAGCCTGTCTTGATCAAAGCCCCTTCTCCCCCTGCAGTAGAGAATAAAGACTCGCCTAAGCCAGACGACCTGAGCAGCAAGCCAGTGATGAAGAACAATATTGTGGAGGCAGAGCCTGCAAAGATGCAAAAAGAGAGTTCAGCAGATAATCACATCAAAAATGATGCCGACGGAAGCGCGTTCGAGGACGCCTTAGAGGAGTTGTCTCCAGTTCAGAAACGGAAGGGCCGGCAGTCTAACTGGAATCCCCAGCATCTCCTAATTCTCCAGGCACAGTTCGCCTCCAGTCTGAGGGAAACCCCAGAGGGGAAGTACATTATGACTGACCTGGGCCCACAAGAGCGGGTCCACATTTGCAAATTCACTGGTCTTTCCATGACCACCATAAGCCATTGGCTGGCCAACGTTAAGTATCAGTTGAGGCGGACAGGTGGAACGAAGTTCCTAAAGAATATAGATTCTGGTCAACCAGTGTTCCTTTGCAATGACTGTGCCTCTCAGTTCAGGACTCCCTCCACTTACATAAACCACTTAGAGTCGCATTTAGGCTTCAGCTTGAAGGACCTGTCAAAGTTGTCAATAGATCACATACGGGAGCAGCAGGCTGTTTCAAAGGTGATATCCGATAAGACATTTGGCTCACTCGGGCTCTCCGAGGATGACTCTGGATCCATATTCCAGTGTAAGCTGTGCAACCGAACTTTCGCCAGCAAACATGCAGTAAAACTGCACCTTAGCAAAACACATGGCAAGTCACCAGAGGACCATTTGGTGTATGTCACTGAACTAGAAAAGCTAGAGAAACAGTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111804 lncRNA downstream 2261 38816944 ~ 38817150 (-) True G89631
TU111803 lncRNA downstream 175373 38643828 ~ 38644038 (-) True G89630
TU111798 lncRNA downstream 327826 38491335 ~ 38491585 (-) True G89625
TU111791 lncRNA downstream 393971 38422700 ~ 38425440 (-) True G89618
TU111790 lncRNA downstream 396735 38421733 ~ 38422676 (-) True G89617
TU111830 lncRNA upstream 113267 38939562 ~ 38939824 (-) True G89657
TU111901 lncRNA upstream 507630 39333925 ~ 39334125 (-) True G89716
TU111908 lncRNA upstream 557354 39383649 ~ 39385676 (-) True G89723
TU111909 lncRNA upstream 559523 39385818 ~ 39386082 (-) True G89724
TU111943 lncRNA upstream 636180 39462475 ~ 39462921 (-) True G89748
AMCG00021908 mRNA downstream 574374 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021909 mRNA downstream 594807 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021907 mRNA downstream 860878 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021906 mRNA downstream 1584570 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021905 mRNA downstream 1648032 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021921 mRNA upstream 112312 38938607 ~ 38945501 (-) True AMCG00021921
AMCG00021920 mRNA upstream 218490 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021919 mRNA upstream 364603 39190898 ~ 39192682 (-) True AMCG00021919
AMCG00021917 mRNA upstream 382720 39209015 ~ 39234436 (-) True AMCG00021917
AMCG00021918 mRNA upstream 429586 39255881 ~ 39276056 (-) True AMCG00021918
TU111784 other downstream 421656 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 535556 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 2131769 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 2381061 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 2872427 35943752 ~ 35946984 (-) True G89368
TU111863 other upstream 429584 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 659538 39485833 ~ 39486288 (-) True G89765

Expression Profile