RNA id: AMCG00021917


Basic Information

Item Value
RNA id AMCG00021917
length 2330
RNA type mRNA
GC content 0.44
exon number 16
gene id AMCG00021917
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39209015 ~ 39234436 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCCTTCAGATGTGGAGAAACAGGTGATTGACTATTTAAGTGCTTTGTTTGCTAAACGCAATAGTCCAAATAAGCTGAAAGTGCAAATGGTCATTGGAGCCAAACCTTGGGTGGCTGACATCAATGACCCGCCGTATGAAGCGGGGAAAAAAGCTGTCAAGAAAGTGTTCGGAGAGGATCCTCATATGATCCGAGAGGGAGGAACGATCCCTGTAGCGAAAACATTTGAAGACCTACCCaatggcaaaataattcctcttCTGAAAGTTGTCACAGCTCAGTTtgggaatgaccccaagaagcGGACAGTCTGTGTTTATGGCCATGTTGATGTCCAGCCTGCTAAAAAGGAGGATGGGTGGGCAACAGAGCCTTACAACCTGACTGATATTAATGAAGCTGACTTCAGCAACTTCTCTGAAAAGACATTACACGATCTTCATTATTCTCTTTACAAAAATAGCAAGGAAAAGACTGCTGGACACAGAGCTGAATACAGCGGAACTATGGTGAAGCTCCTTGTTTCCGtaattatgttatatatgtCCTCTGAAGTGACAATGTCACCTTTGGACGATTTATTCCAGTACATAGATGGACACCAAGATGACTTTGTACAGACCTTGAAGCAGTGGGTGGGTATCAAGAGCGATTCCAGTGATCCCAGGACCTGGAATGAAGTGGAGAGGATATTAAATGTGACAGCAGTGAAGATCAGAGATCTAGGAGGAATTGTAGAGTTTGCTGATGTGGGAAAACAGCAGATGCCCAATGGAGAATCCATTCCCACACCACCAGTAATCTTAGCAGAATTCAAGAAGGACCCAAAAAAACCTACTCTCTGTATTTATGGACATGTTGATGTGCAGCCAGCTGAGAAGAAGGATGGCTGGGCAACAGATCCATACACTCTAACCGAAGTTAATGGTAACTTATATGGACGAGGAGCAACAGATAACAAAGGACCTGTTCTTGCTTGGATTCATGCAGTGGAAACCTATCAAGCCATGaaaaagGAAATTCCAGTCAATTTGAAGTTTATCATTGAAGGGATGGAAGAGGTGGGATCGACTGGCTTGGAGACATTGGTTAAGCAACGAAATGACAGCTTTTTTGCTGATGTGAACTATATAGTTATCTCAGACAATGTTTGGGTAAGCAAGAAACCTGCTCTCACTTATGGAACCAGAGGAAACACCTACTTCCTTGTTGAGGTTGAAGGACAGAAGCAAGATATGCACTCTGGAGTCTTTGGGGGTTCCGTTCATGAACCATTGATTAATTTGATAGCTTTGCTTGGCAGTCTTGTAGACAGCAAGGGTACAATCCTGATCCCTGGCATAAATGAGGCTGTGGCCCCTCTAACAGAAGAGGAGAGGAAACTGTATGAGGGTATTGATTTTGACCTGGAAGAACACAAAAATGACACTGGCGTGACACGCTTCCTCCATGACACCAAGgaGGATATACTCATGTCTCGCTGGCGCTATCCAGCCCTCTCTATACATGGAATTGAGGGTGCTTTTTCTGCTCCTGGCACAAAGACTGTTATCCCCAGAAAAGTTACTGGGAAATTCTCTATCCGCCAAGTACCTAATATGGACCCTCCTGTGGTGGAGAGGCAGGTCACAGAACACCTTCAGGAAATCTTTGCAAAGCAAAACAGCCCTAACAAGCTGAAAGTGACAATGGTTGTTGATGCAAAACCTTGGATGGCTGATTTGAAGGACCCTCAATATGTTGCAGTGTTTGGAGTGGAGCCAGACCTAATTAGAGAAGGCTCCACAATACCAATTGCTAGAAACTTCCAGGAAATCACAGGGAAGAGTGTCATGATGCTGCCCATTGGAGGCGCTGATGATGGAGAGCACTCTCAGAATGAGAAGATCAGCAGATCCAACTACATACAGGGGACAAAACTTTTTGCTGCCTATGTGTATGAACTGTCTCAGGTTTAATAAGACTGACTTTGCATTTGAAGAACCAcatgtctttccctgtgtgtctgtgaataaggtcactgtctcatggtcttactgtgctactgtactgtgctatatagttcaaccctgatacctagaagaacagggtctgacaAGAACCAATTTTCTCCAGggatttgggcttgatacacaTTACGCATGCCTTCATTTCACCCTGGTTTAGCTAGATATGGGGCTTCCTTAGCAGTTGTCAGGCGAAAATCGAGCTTCCACTCATCAGAGGACAGACATGTGAGcttgttatctttctctcctgtctggtgtGCATAAAAGTGCTTGTAGTTTGTAACTTTTCTAAGACTTTTCAGGAGATTGCCTGTCGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K05604 CNDP1; beta-Ala-His dipeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111830 lncRNA downstream 269191 38939562 ~ 38939824 (-) True G89657
TU111804 lncRNA downstream 391865 38816944 ~ 38817150 (-) True G89631
TU111803 lncRNA downstream 564977 38643828 ~ 38644038 (-) True G89630
TU111798 lncRNA downstream 717430 38491335 ~ 38491585 (-) True G89625
TU111791 lncRNA downstream 783575 38422700 ~ 38425440 (-) True G89618
TU111901 lncRNA upstream 99489 39333925 ~ 39334125 (-) True G89716
TU111908 lncRNA upstream 149213 39383649 ~ 39385676 (-) True G89723
TU111909 lncRNA upstream 151382 39385818 ~ 39386082 (-) True G89724
TU111943 lncRNA upstream 228039 39462475 ~ 39462921 (-) True G89748
TU111944 lncRNA upstream 229996 39464432 ~ 39465633 (-) True G89749
AMCG00021919 mRNA downstream 16333 39190898 ~ 39192682 (-) True AMCG00021919
AMCG00021920 mRNA downstream 156342 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021921 mRNA downstream 263514 38938607 ~ 38945501 (-) True AMCG00021921
AMCG00021913 mRNA downstream 382720 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021908 mRNA downstream 963978 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021918 mRNA upstream 21445 39255881 ~ 39276056 (-) True AMCG00021918
AMCG00021916 mRNA upstream 48834 39283270 ~ 39285802 (-) True AMCG00021916
AMCG00021922 mRNA upstream 137370 39371806 ~ 39373457 (-) True AMCG00021922
AMCG00021926 mRNA upstream 185821 39420257 ~ 39423376 (-) True AMCG00021926
AMCG00021923 mRNA upstream 210052 39444488 ~ 39448728 (-) True AMCG00021923
TU111784 other downstream 811260 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 925160 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 2521373 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 2770665 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 3262031 35943752 ~ 35946984 (-) True G89368
TU111863 other upstream 21443 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 251397 39485833 ~ 39486288 (-) True G89765

Expression Profile