RNA id: TU111863


Basic Information

Item Value
RNA id TU111863
length 1155
RNA type TUCP
GC content 0.44
exon number 6
gene id AMCG00021918
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39255879 ~ 39276056 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TATGTTTTCAACTAAGAAAAGCGCAGGAAATCCAACTGCATCAAAGCAGACGTATTTAAAACAACGTATTCAAAGGATCCTCAGTAAAACCACcacttattatatttttggttttgcaaATAATGTGTTCAGTCCTCATGCAGTATTAATTTGACTGAATGTCGTTCTATCAGTTTATGTCCTACCACTGCAATTATGTGCCCCAGTTTCCATTCTGTAATTTTGTGGATGTACCGGTCACTTATAAAGTACATCTGAATAACGCTGAGGTGTGTCTGAGTTAACATTGTGAACTCAAACTAAAATCTTTGCCAATCGGACACCACAGTCCAGCCTGAGGAGGCGTTTATGTCAGTATAAAAGGCTACGTCCACGCGGGACAAGAGCAGGGGAGGAAAGGAGACCAAGCAAACAAGCACACATTTCACCAGGGGACACACTGACCGAGATGAATTATTTGCTCTTCTCCTCGATCCTTCTCCTCACTCCAAGCCTCCATGCATTCAACTTGGATGCCTTTAGTAAACACATTGACAGCCACCAAGAGGAATATGTGGAGGCCCTTAGAGAGTGGGTGGCTGTGGAGAGTGATTCCAGTGATGCGCTGAAGAGACCTGAAGTGGAAAAAATGATGGAAATCACTGCAGAGAAACTCAGAAAAATGGGTGGGAAAGTGGACTTGGTGGATATTGGTAATCAGGAGCTACCCaatggcaaaataattcctcttCCGAAAGTTGTCACAGCTCAGTTtgggaatgaccccaagaagcGGACAGTCTGTGTTTATGGCCATGTTGATGTCCAGCCTGCTAAACAGGAGGATGGGTGGGCAACAGAGCCTTACAACCTGACTGATATTAATGGTAATCTGCATGGAAGAGGGGCATCTGATAACAAAGCTCCAGTTCTTGCCTGGATTCATGCAGTCGAAGCATATCAGGCTCTGAACATCGAACTCCCTGTCAATGTGAAGTACATCATTGAAGGAATGGAGGAAACTGGATCCAATGGCCTGGATGCTATGGTTTCTCAACGGAAAGACACCTTCTTTTCTGACATTGATTACATCATCATATCAGATTGTGGTTGGCTGAGCCGGAGGCCAGCTCTGACCTATGGAACAAGAGGAAACTGTTACTTCTTTGCTGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111830 lncRNA downstream 316055 38939562 ~ 38939824 (-) True G89657
TU111804 lncRNA downstream 438729 38816944 ~ 38817150 (-) True G89631
TU111803 lncRNA downstream 611841 38643828 ~ 38644038 (-) True G89630
TU111798 lncRNA downstream 764294 38491335 ~ 38491585 (-) True G89625
TU111791 lncRNA downstream 830439 38422700 ~ 38425440 (-) True G89618
TU111901 lncRNA upstream 74121 39333925 ~ 39334125 (-) True G89716
TU111908 lncRNA upstream 123845 39383649 ~ 39385676 (-) True G89723
TU111909 lncRNA upstream 126014 39385818 ~ 39386082 (-) True G89724
TU111943 lncRNA upstream 202671 39462475 ~ 39462921 (-) True G89748
TU111944 lncRNA upstream 204628 39464432 ~ 39465633 (-) True G89749
AMCG00021917 mRNA downstream 21443 39209015 ~ 39234436 (-) True AMCG00021917
AMCG00021919 mRNA downstream 63197 39190898 ~ 39192682 (-) True AMCG00021919
AMCG00021920 mRNA downstream 203206 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021921 mRNA downstream 310378 38938607 ~ 38945501 (-) True AMCG00021921
AMCG00021913 mRNA downstream 429584 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021916 mRNA upstream 23466 39283270 ~ 39285802 (-) True AMCG00021916
AMCG00021922 mRNA upstream 112002 39371806 ~ 39373457 (-) True AMCG00021922
AMCG00021926 mRNA upstream 160453 39420257 ~ 39423376 (-) True AMCG00021926
AMCG00021923 mRNA upstream 184684 39444488 ~ 39448728 (-) True AMCG00021923
AMCG00021925 mRNA upstream 216172 39475976 ~ 39479016 (-) True AMCG00021925
TU111784 other downstream 858124 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 972024 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 2568237 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 2817529 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 3308895 35943752 ~ 35946984 (-) True G89368
TU111960 other upstream 226029 39485833 ~ 39486288 (-) True G89765

Expression Profile