RNA id: AMCG00021919


Basic Information

Item Value
RNA id AMCG00021919
length 1452
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00021919
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39190898 ~ 39192682 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACCGTCACTGTGCTACCAAGAAGCATAAGAACCGTGCTGAGGCAGCCAGAAATAAGAATCCAGAGGATGACCAAGCTTTTCCTGATAGTGTCATTGAGGTTCTCAACAATGGACAGGTTGCAAACATTGAAGTCCTTGGAGAACATATCAGTGAGGTAGCAGCCATGGAAGCAGGAAACCAGGAAGAAACCATGATTAATCAATCAAAAGGAGAGATTGGCACTGATGAAGCATTAGATGATGATGGGCTTCCTTCTCATAATGAGGAAAACATTGAAAACCAGACTGGTGTTGATCAAGTTTTACCTGGAGATCACGACAGCAGCGAGCAAGACCTCGGTGGTACCATgcagaaaaaaaACAAAGGCAATTTAAAGGATGTGAAGGATGGGCATATTAAGTCCAACACTATTGAGAATGTAGTGACCTGCAGTAGTGAGGATGCAGAACAATCTGAAATGGAAAGTGACAATCAAACTACTAGTCAGGAAAAACAAGGTGATTCTGAAGATAATGTGTGTGATGATACAACTGAAGGTCACCCTATCCCTGATGAAACCACACTGGATAACACAAATGAGCCTTCTGATAGTTGCTCAGAAAGAGTTGAGATGAACATCAGTCAAGGAGAGAGCCAGCTCACAAGACTTAACAAATCCAACACTATATTGGTAAAAGAGAACATCAGTGACCAAGCTTTACAAGAAGGTGTTGCAGAAGATGTGAATGAGGGTTTACAAGACCCTGATTTAGAGATACTGGCTAGTAATATTGCCAGTCCCTGTCTAACTAAGCAGTTAGTCAGGGCTATTCCGTTTGATGCCTCGATTGTTCCTCTCAAACCCAGTTCAGATTCTGAAATCACAGATGTGGATGGAGGTCAGTCTTCTGAAAGGAGTGCAATCAACAGCTCTTCTACCATGCCCACCCCATCAAAGGAAgtgagaaagaagaagaaatcgGATGGACTGACACAGAGTGAGAGTGTGCGAATTCGGTGTGAAGACTGTGGCTTCATGGCTGATGGGCTGAGTGGGCTGAACGTGCACATATCTATGAAACACCCCTCGAAGGAGAAGCACTTTCATTGTTTGCTCTGTGGGAAGTCCTTTTACACTGAGAGCAATCTCCACCAGCACCTGACCAGTGTAGGTCATCTGAGAAACGAGCAAGCCAGTATAGAGGAGCTCCCAGAGGGGGGTGCCACATTCAAGTGCGTGAAATGCACTGACCCCTTTGAGACAGAGCAGGACCTCTTCATGCACATCAAAGAGAAGCATGAAGAGCTGCTCCGAGAAGTTAACAAGTACATTCTGGAAGACACAGAGCAGATCAACAAGGAACGAGAGGAGAATCAAGGCAACGTCTGCAAGTACTGCGGGAAGGTGTGCAAAAGCAGCAACTCCATGGCTTTTTTGGCCCACATtcgcacacacacaggtacgTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111830 lncRNA downstream 251074 38939562 ~ 38939824 (-) True G89657
TU111804 lncRNA downstream 373748 38816944 ~ 38817150 (-) True G89631
TU111803 lncRNA downstream 546860 38643828 ~ 38644038 (-) True G89630
TU111798 lncRNA downstream 699313 38491335 ~ 38491585 (-) True G89625
TU111791 lncRNA downstream 765458 38422700 ~ 38425440 (-) True G89618
TU111901 lncRNA upstream 141243 39333925 ~ 39334125 (-) True G89716
TU111908 lncRNA upstream 190967 39383649 ~ 39385676 (-) True G89723
TU111909 lncRNA upstream 193136 39385818 ~ 39386082 (-) True G89724
TU111943 lncRNA upstream 269793 39462475 ~ 39462921 (-) True G89748
TU111944 lncRNA upstream 271750 39464432 ~ 39465633 (-) True G89749
AMCG00021920 mRNA downstream 138225 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021921 mRNA downstream 245397 38938607 ~ 38945501 (-) True AMCG00021921
AMCG00021913 mRNA downstream 364603 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021908 mRNA downstream 945861 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021909 mRNA downstream 966294 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021917 mRNA upstream 16333 39209015 ~ 39234436 (-) True AMCG00021917
AMCG00021918 mRNA upstream 63199 39255881 ~ 39276056 (-) True AMCG00021918
AMCG00021916 mRNA upstream 90588 39283270 ~ 39285802 (-) True AMCG00021916
AMCG00021922 mRNA upstream 179124 39371806 ~ 39373457 (-) True AMCG00021922
AMCG00021926 mRNA upstream 227575 39420257 ~ 39423376 (-) True AMCG00021926
TU111784 other downstream 793143 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 907043 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 2503256 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 2752548 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 3243914 35943752 ~ 35946984 (-) True G89368
TU111863 other upstream 63197 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 293151 39485833 ~ 39486288 (-) True G89765

Expression Profile