RNA id: AMCG00021921


Basic Information

Item Value
RNA id AMCG00021921
length 1077
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00021921
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38938607 ~ 38945501 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgggtatattttgtatttcaggaATTGTCTCCAAATCCTTTGAATGTCGTCTAAAAGGCCAGGGAGCTTCCTTTGTGGAGACAGATTCTGCGTTCATTGCAGATGAGTCTTCCCCAGTAAAAGAAAGAGTGCCGAGAGGCTCCAGGAGACAGCTCACATCCCAGCCTGAGTCCGTCCAGCAGGTTATCATCATCCAGGGCTTCCCTGAGGACTACGGGGGCGAGTATGCCATCGACGCCGCCATGGAGGAGTCTGCTGCTGCCACCCTTCAGACTCTGGCCATGGGAGGCCAGGTCACTGAAGTGGTGCACATCACAGAAGATGGGCAGGTCATTTCCACAAGCGGGAGCAGGGCTCACATGAGCCGCATGCTTCCTGGGGAAATAGAGCTCCCGGCGGGAACAACTCAGGTAGTGGTAGTAGAATCTCCCATGGAAGGGACCTCCTGTGAAGAGATGATGACAGGACAGGAGACCACAGTTCACACCACTGAATCCTCTTCAGCTCTGGATGCCCTTCTGTGTGCCGTCACAGAACTGGGCACCATGAAAGAACAACAAGAGCAGCGGGACTTGACCAAGACCCTGGAAAGTGCGCAGTTCAAAGATGTCGTCCAAGAGGTCTTGCAGTTCGCCATGTGTGACATGGCAACTGCTGGCCACCTCATGAAGGAGGGCCTGACGCGTGTCATCGTCAATGATGAAGGTAGAGTCCACATGGTGTCAGGAGGAGGATCCCAGATCATCATGCAAGAGGAAGGTCATATGATCAGCATGCCCAACCAGCACATGGACCTGGTGGGTTCTGATGGGGAGATCTCCCAAATCATTGTCACAGAGGGCATAGCACGAGCCATGGTCCAAAACTCTGGCCAGAGCTTCTCAGGagaaaacacacattacattgtCACTGAACTTGATGACTCCACTCTCCAAGTGGAAGGGGCAGTCTATTCCCAAAATGCACCAGTGAAAAGCCCCTGTCAAGAAGCCACTGTATACCAAGGGGAAGAAGGTAAGAGAGaaattgtgatttttctgtACAGTCCTCCTCCTTCCGACAGGATCTCTCTCTAG

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111804 lncRNA downstream 121457 38816944 ~ 38817150 (-) True G89631
TU111803 lncRNA downstream 294569 38643828 ~ 38644038 (-) True G89630
TU111798 lncRNA downstream 447022 38491335 ~ 38491585 (-) True G89625
TU111791 lncRNA downstream 513167 38422700 ~ 38425440 (-) True G89618
TU111790 lncRNA downstream 515931 38421733 ~ 38422676 (-) True G89617
TU111901 lncRNA upstream 388424 39333925 ~ 39334125 (-) True G89716
TU111908 lncRNA upstream 438148 39383649 ~ 39385676 (-) True G89723
TU111909 lncRNA upstream 440317 39385818 ~ 39386082 (-) True G89724
TU111943 lncRNA upstream 516974 39462475 ~ 39462921 (-) True G89748
TU111944 lncRNA upstream 518931 39464432 ~ 39465633 (-) True G89749
AMCG00021913 mRNA downstream 112312 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021908 mRNA downstream 693570 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021909 mRNA downstream 714003 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021907 mRNA downstream 980074 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021906 mRNA downstream 1703766 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021920 mRNA upstream 99284 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021919 mRNA upstream 245397 39190898 ~ 39192682 (-) True AMCG00021919
AMCG00021917 mRNA upstream 263514 39209015 ~ 39234436 (-) True AMCG00021917
AMCG00021918 mRNA upstream 310380 39255881 ~ 39276056 (-) True AMCG00021918
AMCG00021916 mRNA upstream 337769 39283270 ~ 39285802 (-) True AMCG00021916
TU111784 other downstream 540852 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 654752 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 2250965 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 2500257 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 2991623 35943752 ~ 35946984 (-) True G89368
TU111863 other upstream 310378 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 540332 39485833 ~ 39486288 (-) True G89765

Expression Profile