RNA id: AMCG00021926


Basic Information

Item Value
RNA id AMCG00021926
length 1580
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00021926
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39420257 ~ 39423376 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTTCCTGGGTAGCCATCAATGGAATGTGGGTGGAGCTGCCCCTCATTGTCCCTGAGATTCCAGAAGGATGGTACCTGCCCTCCTATCTCACTGTCCTCATTCAGCTGGCTAATATGGGACCCTTGTTTATCACTCTGATGCACCGTTTCCACCCAGGCAAGCTCAATGAAGTGGGGGTCATTTACACAATCATTGGCTTGGGCATCGTGGCCAGTTTCCTCCTGGCTTTCTTCTGGAAGGAGACTGTTGATGTGGGTGGTGCTTCCCACAGCATTCCTCTCCTAATACTTACCTTCTTCCTTTCCACTGTGGACTGCACCTCCTCTGTCACCTTTCTGCCTTTCATGATGCGTCTGAAGCCCCAGTACCTGACCACATATTTTATCGGTGAAGGTCTCAGTGGGCTGGTCCCAGGATTGGTGGCCTTGTTTCAAGGGGCCTTCCTGCTTTTAAACTGCCATCCATCCATTGGCCGGGAACGCAAAAACAACCGACACCTGAATGGCGTTGTACTGGGGGAAAATGCAGAACTGTGCCTTAGACAGAATAACCAGCTGGAGCAGAAACCAATGATCAGTCCCGTGGAAAGTCCCCAGACAGAGACAAGGAGCTCTTTTGGAACTGGGAAATACAGCTGGATGCAAATCCTGTTTATCTTTGTGAACCTTGCTTGGGTAAATGCACTGACCAATGCTGTCCTTCCTTCTGTGCAGTCATACTCTTGCCTGCCCTATGGCAATAATGCCTATCATCTCTCAGCCACCCTTGCAGCAGTTGCTAACCCTATGGCCTGCTTTATTGCCATGTTTTTGCCCATAAGGTCATTGCTGCTGATGGGTGGTCTAACTGTAGCTGGCTCTGGGATTGGATGTTACATCATGGCCATGGCAGCACTGAGTCCCTGTCCATTACTCATTCATTACACTACTGGGACTTTCCTTATTGTCACAGCCTGGGTGCTTTTTGTCCTCACACTGTCCTATGTGAAGGTGATGATCGGGATTATTCTCCGAGATGAAGGCCACAGCGCCCTCGTGTGGTGTGGTGCTGTAGTGCAGTTAGGCTCCATGATTGGTGCTCTAACAATGTTTCCCCTGATTAGTGTTTATAACTTGTTCCAGTCTGGGGATCCCTGTAATACACATTGTCCAAAGTAATGAcacctgaaaagaaaaataagatatatttttagaatttaattttcaatttacagggaattattatgttttataactAGTTTATACTGATTTAGCCATTAGTAGTCAGTCAATGATTAATAATAGTCTCACTATTAGTTAAATATGTTGTCAACTTTATGTATATCCCTGATTATTTGAGCAACATAATTTTTGCAATTTGGATGGGAAACCTTGAGTAGGTTATGATGCAGTTATTGAGTAGGGTATAATGTAGTAATCTTGGTTTGACAAGATGGAGCACTTAATATAGTAATCCAAACTTCTCAAGGTGTCTTAGGTCAAATTTCAGAGAGAAAGGTTATTTTTGCCTTGAAGcacactataatatatatatatatatatatatatatatatatatatatatatacttatatata

Function

GO: NA

KEGG:

id description
K14620 SLC52A3, RFT2; riboflavin transporter 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111909 lncRNA downstream 34175 39385818 ~ 39386082 (-) True G89724
TU111908 lncRNA downstream 34581 39383649 ~ 39385676 (-) True G89723
TU111901 lncRNA downstream 86132 39333925 ~ 39334125 (-) True G89716
TU111830 lncRNA downstream 480433 38939562 ~ 38939824 (-) True G89657
TU111804 lncRNA downstream 603107 38816944 ~ 38817150 (-) True G89631
TU111943 lncRNA upstream 39099 39462475 ~ 39462921 (-) True G89748
TU111944 lncRNA upstream 41056 39464432 ~ 39465633 (-) True G89749
TU111946 lncRNA upstream 45389 39468765 ~ 39470104 (-) True G89751
TU111971 lncRNA upstream 63521 39486897 ~ 39489033 (-) False AMCG00021924
TU111975 lncRNA upstream 122565 39545941 ~ 39546146 (-) True G89776
AMCG00021922 mRNA downstream 46800 39371806 ~ 39373457 (-) True AMCG00021922
AMCG00021916 mRNA downstream 134455 39283270 ~ 39285802 (-) True AMCG00021916
AMCG00021918 mRNA downstream 144201 39255881 ~ 39276056 (-) True AMCG00021918
AMCG00021917 mRNA downstream 185821 39209015 ~ 39234436 (-) True AMCG00021917
AMCG00021919 mRNA downstream 227575 39190898 ~ 39192682 (-) True AMCG00021919
AMCG00021923 mRNA upstream 21112 39444488 ~ 39448728 (-) True AMCG00021923
AMCG00021925 mRNA upstream 52600 39475976 ~ 39479016 (-) True AMCG00021925
AMCG00021924 mRNA upstream 65105 39488481 ~ 39548802 (-) True AMCG00021924
AMCG00021928 mRNA upstream 132131 39555507 ~ 39556745 (-) True AMCG00021928
TU111863 other downstream 160453 39255879 ~ 39259804 (-) False AMCG00021918
TU111784 other downstream 1022502 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 1136402 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 2732615 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 2981907 36415039 ~ 36438350 (-) False AMCG00021895
TU111960 other upstream 62457 39485833 ~ 39486288 (-) True G89765

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019375 True 2071 mRNA 0.44 4 NC_007127.7 5597600 ~ 5605341 (+)
grasscarp (Ctenopharyngodon idella) CI01000065_04844180_04849353.mRNA True 1894 mRNA 0.44 3 CI01000065 4844180 ~ 4849831 (+)
rainbow trout (Oncorhynchus mykiss) TU1765488 True 1060 lncRNA 0.55 1 NC_048582.1 34635809 ~ 34636868 (-)