RNA id: TU103771


Basic Information

Item Value
RNA id TU103771
length 3896
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G83153
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 777159 ~ 782656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTATTTATGACCCACTAGGAAAACTAtcatttatttagaaaagaaaagaaaaaaaaaaaagcttacacTGGTAGAATACAGCAGATAAAAAGTCCAAAAAGTAGTTCTGAAACTCGTGCGACTGTTTGCAGTACAAATCTCCTGTAGTTGTACAAGTAATTTATTTGCGTCATGAAGTTCtcaactttttgttttatacaattcatttaaaaacattgtgacAAACACAagcgcacacacaaaaaataatgatttttgcAAAGGGACATCTCAAATGAAAGTAACAATCTGAATTTAATTACATGTaacaattttattattgtatacataatatacaaataGACCATTTGTATCGTTTCAAACAGCTACTCCTAAAGATTTCACATACATGGATTAAAAGgagccaaacaaataaataaaaaataaacctaaatgAGGTAAATGCAGCGATGgtaaatgtattctttttagTTGCGATAAAGTAACTGACAAAGCccaaatacagttttttttgtttgctgaaaaattatacaaatgcagGCAGATTTGCAGACAGCATGTAGGAATAATCAATATCTATTTGTACTCAATTACATTTCTTGATGTGTGCAGCACATTGTGctaatatttaaaggaaaacagacTTTCAGCGGTTTACTGAAAATACACAGGAACGAAACAAAATATCAAGTTAAAACACTACAACTATGACATTTCTGGGCAGTACGACAAAAATATTGATGCAGGCAGTaattgttatagttttaaatgGGTCCTCGGTTTCGTCTGTGATCCATAGaaaagaagcagaaataaaaagctgtcgatacaggtgtgtgtgtgtgtgtgtgtgtatctgtgtgtgtgtgtgtgtgtgtgaagtaaAAGCAGGTCTTTTTTCAGACTGTCGCAGccaacagcaaaaaaacatctggaaagAGAGGAAATTGATtcatgttaaattatatattgtacgGTTTATTTCCTGAGGATGTTGAGATTTCAACCCGATATCACACTGACAAAATAGTGCCACACAGAGACTCAAATCAAATGAACCTGTATGTGCACttcagatctgcagaatccctcTGGTAGAATGTATTCTGGCcttcaaatcaaatcattttagatttgggaattataaaatgttataatctTGAAAAGGAATTGAAATCTCAAACTATTTGCAAGTGTATtatgcagtgaaaataaaaataccacaaTTAACAAggtattcacacacacaggataAACTGCTACATGAATCTGTATTTCTATAATCCCTGCGAGGggaggacaaaaaaataaaaaaaaatcataattgatCACTCGTAGCTCAGTGCAGTCCAGACAAACTATAATCCACTGCATGGAGATAATGTGTTATCTGGAAAAAATACTCTTTGCTGTCAAGCAGAAACATCATTTAAACCATGTTTATCATCCTTTCTTCATTCAGAAAGCtctgttcttaaaataaacagatgatCTAAAAATCAGAATATTAAGTACaataacacaaagaaaacaattgccCACTGCATAATTTACTACTTGGCAATTAACTATTTGCCAGTTGTAATTATAGGGCATATTCTTCAGCAGTGGAGATAATTGTTAATTTCACAGTCCTATTCAAAAGCTGCTCTCATCTGTAGCGATTAGTTAACAATCGCGAGCGCTTCTGATACACAAGCACcttaaatacacaaagaaagagGAGAAGAACACAGAAACGAGAGGGTCAGCTGGGTTGCGAGGAAACGCAATATACCTCTGAAGAATTTCAGAATAGCGATGTAAAAACAACAGATCTGCAGAGTCGGAGATGTCGAGCGTGCCTGTGTctgattttctgattttatttgcatttattttcttcctttagCAGCCCTTGTGAAGGACCGGACCGTGCTGTCATCACTGTATCTCTCAATGTATGCAAGATGGCATAAACCTGCAGCACAATTTCAGAGCTACAACTGGTCACCATGTTTCTTGAAGGCCGTCATGTCCAACAGACCACCATGTAGGACAACTTCTCCACTCATTTCCGTCCTGGCTGAGGGGGTCCCCTACTCGGCTTCTCGATAGAGTGATATGCGTCGGCCTCCGTGATGGTCTTGCCATTTAGAGATGCATCTGATACTTGAATACCTTTAGAGGTGGTACGGTCCATTCTCTGCGATTGACCTTGCACTTGAGATCTGGGAACATCTCGGACGTCTTCGAAGGTCTGGGTCTCTGGTCGAATCCAATATCGCATGGCACCAACCTGAGAGATATTCCTCTACAGTAACTGCAGTCCATGTGAGCAAAatgcacttttgttttcctgcatgAACGATTTCCATTTGACTACACCTTCACATTCGTTTTTCCATTTCCTTAACCCGTTTTCTCAAAGGGATGTCATCCTATGGACGGCACTTAAATGTGCTAAAACCACTGAAATGCATCTGGCAGCGCCGTTAGCCTTGAAGTCTGTAATGTTGTGAACCCTGGAAGCAGGGATTTGTAAACGCTGTCATAAGTGTGAGCTTTTGTTACacatggaaaatatatacatagccAAGACCAGTCTGCACATGTAGAATTCCACCCAGACCTCCTGGGCACTGCTGCACCGAAACAGTTACAATCGCGgctaattaaaaagataaacggtttaattaaacacaacagCTACTCAGTGACATGATGAAGCATCTGTAAATAGTTCAGTTTTCTCTTTCATTCGCAAGCGGTGTAGCAGTAAGCTCTGAGATTATGTCTTACCTTGGCTGCATCAACATACATTATCTATGCTTGTCTGAGGATTTATGAGTATCATTGTTAAGGGAAAAAATTAATTCTGCAACATCAAATAGATTCACACAACATTTGGAGTGGGTTTACGGCTTCTGAACGACTTTTCAAAGGCCACGCAGACTGGAGTCTTTAAGCACAAATACGACGTTTTCAAATATTGATGTTTAAGCTCcactttttttgtcttttaatacttgttttttttgtttttttaaacatgaaagttCAGCCAAGCTCTGCAACAGTTCAAAATCTGCAGCGTTTTCAGAGAATTACACTTTCAAACACATGAAACCCTCGAGACTGCACTGGTTtaatacatagaaataaaacaactgcacaccagtattaataaaaataagatacaaGACTAAAAATGCAATTCAGGAAATTCTCCGCTGTGCCGAACCGCATTGCTTCTGTAGTCTTTGGGGAACAACTTCATGcagtatataaattaaatccCTCTGTAAAGACCCATTTACCAGAGTGGTATAATCTAAATTTAAAAGGCGGTGCTCTCGTGTTTGTGTGCATGGAAGATATGAAATACAGATATACATTAATGCAGCGTCCCTGAGCACTGGGCCGCCATTGATCGCACAACACAATCGCACTCGATTGATGAGCATTAACAGAGGGGGAGGCAGCAGCAACACAGACAGTCGAGTGTGAAACGCATTGTAGTTCAGATACATTTCTACGTCATACATTTCTGAGGCCTGGCAGCTGGGCAGTTTCCTCAGCGTCCTATTAACACACACAAGGATATTGTTTTTTGTCCTCCTTGGCTCCGGTGCTGtccctcttctctttcttctctgACTTCTCCTTGTCATGCCTGGACTCCTTTTTTGCCTCCAGAAGAACTTTTTTCGGGTTTGGCCAAGTCACTCTTTTCCTTGCTGGATGATTTCGAGCTCTTGCTCTTGTCCTTCTCACCGGACCGCGGGGAGTCAGACGGGCTGGCGCTCTTGCTGTGTTTGGAGGAGCCTAGTGGGGGGAAAGCCGGAGCCATGTCAGACCGAGAACATGCGAGAGGAaacccaaataaaacaaaatgggggAAAGGCAACTAATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103717 lncRNA upstream 491027 285921 ~ 286132 (+) True G83114
TU103687 lncRNA upstream 531840 243756 ~ 245319 (+) True G83086
TU103850 lncRNA downstream 565119 1346451 ~ 1346771 (+) True G83221
TU103914 lncRNA downstream 1136396 1917728 ~ 1919310 (+) False AMCG00021063
TU103978 lncRNA downstream 1301782 2083114 ~ 2083451 (+) True G83325
TU103991 lncRNA downstream 1323850 2105182 ~ 2106906 (+) True G83338
TU104037 lncRNA downstream 1419962 2201294 ~ 2201559 (+) True G83374
AMCG00021045 mRNA upstream 20420 749408 ~ 756739 (+) True AMCG00021045
AMCG00021046 mRNA upstream 40174 717627 ~ 736985 (+) True AMCG00021046
AMCG00021043 mRNA upstream 102582 672030 ~ 674577 (+) True AMCG00021043
AMCG00021044 mRNA upstream 111603 642123 ~ 665556 (+) True AMCG00021044
AMCG00021037 mRNA upstream 436757 336891 ~ 340402 (+) True AMCG00021037
AMCG00021047 mRNA downstream 68213 849545 ~ 856470 (+) True AMCG00021047
AMCG00021050 mRNA downstream 98474 879806 ~ 897880 (+) True AMCG00021050
AMCG00021049 mRNA downstream 136685 918017 ~ 926473 (+) False AMCG00021049
AMCG00021052 mRNA downstream 263843 1045175 ~ 1052182 (+) True AMCG00021052
AMCG00021058 mRNA downstream 928001 1709333 ~ 1739006 (+) True AMCG00021058
TU103781 other downstream 136674 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 3016509 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 3345939 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 3449640 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 6334049 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile