RNA id: TU103996


Basic Information

Item Value
RNA id TU103996
length 346
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G83342
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2079669 ~ 2080014 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACACTATAGCCAAGATGAGAGCAATCTGAATCCGTAGAGCTGTACGTGTAATATCGATTAAGTTATTTTCCTCAAAGACCACATCGTCAGATTTGCACCCAAGTGCCTTACTTGTCATTGACGAACGAGTACATGAGCAGGCGCTCCTCGATGAACTTCTTCCACTCCGGCTTCTCGTTCTGCAGGTCCCGGTAGTTGTCGTTGGACACGATGATGCCGTCCGAGTCGTAGGCGAGCTTCACGATGAAGCGGTCGTCGTAGCAGACCACCCTCCGGCCCTGGACTCGCCGGGAGGGAGTGAAGACAAGGATCTTCTCTTTCTCGAGCTTCCGCAGGATCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103930 lncRNA downstream 214442 1854882 ~ 1865227 (-) True G83294
TU103932 lncRNA downstream 214442 1854882 ~ 1865227 (-) False G83294
TU103832 lncRNA downstream 1153105 922859 ~ 926564 (-) True G83205
TU103692 lncRNA downstream 1994542 84874 ~ 85127 (-) True G83091
TU103682 lncRNA downstream 2042778 36247 ~ 36891 (-) True G83081
TU103997 lncRNA upstream 3163 2083177 ~ 2086079 (-) True G83343
TU104000 lncRNA upstream 25050 2105064 ~ 2106398 (-) True G83346
TU104009 lncRNA upstream 60276 2140290 ~ 2141743 (-) True G83352
TU104012 lncRNA upstream 64390 2144404 ~ 2147117 (-) True G83355
TU104034 lncRNA upstream 110612 2190626 ~ 2190909 (-) True G83371
AMCG00021072 mRNA downstream 22284 2049196 ~ 2057385 (-) True AMCG00021072
AMCG00021068 mRNA downstream 105561 1973785 ~ 1974108 (-) True AMCG00021068
AMCG00021069 mRNA downstream 106132 1969250 ~ 1973537 (-) True AMCG00021069
AMCG00021065 mRNA downstream 126793 1931558 ~ 1952876 (-) True AMCG00021065
AMCG00021067 mRNA downstream 151811 1926713 ~ 1927858 (-) True AMCG00021067
AMCG00021075 mRNA upstream 6612 2086626 ~ 2106886 (-) True AMCG00021075
AMCG00021078 mRNA upstream 77635 2157649 ~ 2176534 (-) True AMCG00021078
AMCG00021077 mRNA upstream 150494 2230508 ~ 2245691 (-) True AMCG00021077
AMCG00021082 mRNA upstream 322160 2402174 ~ 2412334 (-) True AMCG00021082
AMCG00021085 mRNA upstream 442846 2522860 ~ 2576954 (-) True AMCG00021085
TU103965 other downstream 101701 1973160 ~ 1977968 (-) True G83313
TU104110 other upstream 376987 2457001 ~ 2459379 (-) True G83428
TU104173 other upstream 601546 2681560 ~ 2681762 (-) False AMCG00021090
TU104502 other upstream 2668767 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 4464478 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 10447079 12527093 ~ 12527694 (-) True G84814

Expression Profile