RNA id: TU104000


Basic Information

Item Value
RNA id TU104000
length 248
lncRNA type intronic
GC content 0.44
exon number 2
gene id G83346
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2105064 ~ 2106398 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtgtgtgcagtgtgctctgtgtgttacacactgtgtgtgtgcagtgtgctctGTGTATtacacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcagtgtgctctgtgtgttacacactgtgtgtgtgtttattatacatGTGCACACAAGCCACAATACTACAGCTTAGACCTGAATTGTGCAAAGATGTTGCAGTAAAACTTGCATTTAATGAACTGCTTCGATCACGAAGTAACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103997 lncRNA downstream 18985 2083177 ~ 2086079 (-) True G83343
TU103996 lncRNA downstream 25050 2079669 ~ 2080014 (-) True G83342
TU103930 lncRNA downstream 239837 1854882 ~ 1865227 (-) True G83294
TU103932 lncRNA downstream 239837 1854882 ~ 1865227 (-) False G83294
TU103832 lncRNA downstream 1178500 922859 ~ 926564 (-) True G83205
TU104009 lncRNA upstream 33892 2140290 ~ 2141743 (-) True G83352
TU104012 lncRNA upstream 38006 2144404 ~ 2147117 (-) True G83355
TU104034 lncRNA upstream 84228 2190626 ~ 2190909 (-) True G83371
TU104102 lncRNA upstream 247589 2353987 ~ 2354694 (-) True G83422
TU104123 lncRNA upstream 404926 2511324 ~ 2511549 (-) True G83441
AMCG00021072 mRNA downstream 47679 2049196 ~ 2057385 (-) True AMCG00021072
AMCG00021068 mRNA downstream 130956 1973785 ~ 1974108 (-) True AMCG00021068
AMCG00021069 mRNA downstream 131527 1969250 ~ 1973537 (-) True AMCG00021069
AMCG00021065 mRNA downstream 152188 1931558 ~ 1952876 (-) True AMCG00021065
AMCG00021067 mRNA downstream 177206 1926713 ~ 1927858 (-) True AMCG00021067
AMCG00021078 mRNA upstream 51251 2157649 ~ 2176534 (-) True AMCG00021078
AMCG00021077 mRNA upstream 124110 2230508 ~ 2245691 (-) True AMCG00021077
AMCG00021082 mRNA upstream 295776 2402174 ~ 2412334 (-) True AMCG00021082
AMCG00021085 mRNA upstream 416462 2522860 ~ 2576954 (-) True AMCG00021085
AMCG00021086 mRNA upstream 476932 2583330 ~ 2583617 (-) True AMCG00021086
TU103965 other downstream 127096 1973160 ~ 1977968 (-) True G83313
TU104110 other upstream 350603 2457001 ~ 2459379 (-) True G83428
TU104173 other upstream 575162 2681560 ~ 2681762 (-) False AMCG00021090
TU104502 other upstream 2642383 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 4438094 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 10420695 12527093 ~ 12527694 (-) True G84814

Expression Profile