RNA id: TU104074



Basic Information


Item Value
RNA id TU104074
length 820
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G83397
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2278796 ~ 2293041 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGAAATGCAGCTATTTAATGTGGTCTAATGCTACTTATTGGATTGATAACACAACATGCTTTGAACTGCTGCACCTGAGAAAGTCACTTTGAAGAAAGGAAGCCTGTAAACACCACGACTTCATTGCTCATTCAGACTCGGAGGATCGGGCTCTCGTGGTGGTGTCTGTGATGGCAGTTTGCATCCAAGATCTCACTAACGAGAGGTCATTGTCAAAGATGTtgttgagttagcagcctatactATAACAATACTACAACAGCCGCTAACACTCAATACAGATTCAGAGAAAAtggatggttacattttaagaatataccaTAATATTTGTACcacaaattgaggaccaaaaaacattggccaaaatggtttaatagaagtatgcaaaaaaatatcaagacaaagaaaatgctgtatagcgcatacaaaaaggatggagatgaaacaaaatacaaagaatatgttgagctgcaaagagaccttgagaaagggatcaggaaagcaaagagggaaatagaaagaaacatagctcttggagctaaaactaatgcaaagagcttttttcaatactacaacagcaagaggtcaataaaggaggaagtgaaacagataaagggagaaaattgaagtatcttggaaaatgaacaagatgtggcaaatgttctaaatgagtatttcacagaggatttacaaaagaaaagacagatgacAAGTTAaaaaccagtccagtcaaatcctaagagagattaggataaatgaggaggaggtactaaagggactagcagaattaaaaaccaacaaatcacctgggccagatggt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104040 lncRNA upstream 57073 2219093 ~ 2221723 (+) True AMCG00021076
TU104037 lncRNA upstream 77237 2201294 ~ 2201559 (+) True G83374
TU103991 lncRNA upstream 171890 2105182 ~ 2106906 (+) True G83338
TU103978 lncRNA upstream 195345 2083114 ~ 2083451 (+) True G83325
TU103914 lncRNA upstream 359486 1917728 ~ 1919310 (+) False AMCG00021063
TU104109 lncRNA downstream 223218 2516259 ~ 2516915 (+) True G83427
TU104126 lncRNA downstream 229822 2522863 ~ 2525979 (+) True G83443
TU104145 lncRNA downstream 314228 2607269 ~ 2607670 (+) True G83459
TU104186 lncRNA downstream 471752 2764793 ~ 2765004 (+) True G83493
TU104190 lncRNA downstream 644444 2937485 ~ 2937685 (+) True G83497
AMCG00021081 mRNA upstream 1368 2248989 ~ 2277428 (+) True AMCG00021081
AMCG00021076 mRNA upstream 48649 2209482 ~ 2230147 (+) False AMCG00021076
AMCG00021073 mRNA upstream 121902 2151168 ~ 2156894 (+) True AMCG00021073
AMCG00021074 mRNA upstream 132876 2114431 ~ 2145920 (+) True AMCG00021074
AMCG00021070 mRNA upstream 197142 2077424 ~ 2081654 (+) True AMCG00021070
AMCG00021080 mRNA downstream 56638 2349679 ~ 2353070 (+) True AMCG00021080
AMCG00021079 mRNA downstream 77038 2370079 ~ 2376894 (+) True AMCG00021079
AMCG00021084 mRNA downstream 164888 2457929 ~ 2480032 (+) True AMCG00021084
AMCG00021083 mRNA downstream 213175 2506216 ~ 2512207 (+) True AMCG00021083
AMCG00021087 mRNA downstream 295127 2588168 ~ 2597708 (+) True AMCG00021087
TU103781 other upstream 1352321 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 1504800 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 1834230 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 1937931 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 4822340 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 4822340 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile