RNA id: TU104102


Basic Information

Item Value
RNA id TU104102
length 708
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G83422
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2353987 ~ 2354694 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGTATGATAAAAAGACATAATGAATTGGGATAACATTCACCACCTATAATGTGCCTTATCTAAATAGTAATAAACCttataaatattacaaagtacagcaatacattaaacactTTGGTAATCGAAGGATCAAATCAAATAACAAACGAGTGCAGTGCTGTACTTTAAACACAggatatttaaattgtgtttggatcaattgttttttatacagattggcacaagaaaataaataatacatctgaaAGGTTTCATAAGCTCATACAATTGAAATTACATGTGGTAACAGTACAATTTTACAATGGTTAGCGatgtctttcctttttctgATGAGCATAAAGATTTCTACCCAAACAATCCGATCCAATAACTTGTTTTCTAACAATGTCcccaatttaaatatacaataactcAGTATTTCAGTATTATAGGTGCATTTACATGTACATTGCATATACAAAAAgcttaaatacaataatgtacagCAGATATTATGGGGATTGTTCTTGATGTATCTATTAACACTATATTTGCTGATAAATGGAATTTTTCAAATTGGGATGATCTCAAATAAAATTTGACaccatttttttccttttacaatgtaatatttattgtgcTATTCAGTAGATTGAGACAATCCAATGAGGGTGATGTTATGTTCACTTTAATCTCTTCATCCACTTTTCTCAAGTGAGAAAATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104034 lncRNA downstream 163078 2190626 ~ 2190909 (-) True G83371
TU104012 lncRNA downstream 206870 2144404 ~ 2147117 (-) True G83355
TU104009 lncRNA downstream 212244 2140290 ~ 2141743 (-) True G83352
TU104000 lncRNA downstream 247589 2105064 ~ 2106398 (-) True G83346
TU103997 lncRNA downstream 267908 2083177 ~ 2086079 (-) True G83343
TU104123 lncRNA upstream 156630 2511324 ~ 2511549 (-) True G83441
TU104124 lncRNA upstream 160796 2515490 ~ 2517126 (-) True G83442
TU104158 lncRNA upstream 245815 2600509 ~ 2602840 (-) True G83465
TU104174 lncRNA upstream 335276 2689970 ~ 2690210 (-) True G83481
TU104192 lncRNA upstream 586889 2941583 ~ 2954613 (-) True G83499
AMCG00021077 mRNA downstream 108296 2230508 ~ 2245691 (-) True AMCG00021077
AMCG00021078 mRNA downstream 177453 2157649 ~ 2176534 (-) True AMCG00021078
AMCG00021075 mRNA downstream 247101 2086626 ~ 2106886 (-) True AMCG00021075
AMCG00021072 mRNA downstream 296602 2049196 ~ 2057385 (-) True AMCG00021072
AMCG00021068 mRNA downstream 379879 1973785 ~ 1974108 (-) True AMCG00021068
AMCG00021082 mRNA upstream 47480 2402174 ~ 2412334 (-) True AMCG00021082
AMCG00021085 mRNA upstream 168166 2522860 ~ 2576954 (-) True AMCG00021085
AMCG00021086 mRNA upstream 228636 2583330 ~ 2583617 (-) True AMCG00021086
AMCG00021090 mRNA upstream 322891 2677585 ~ 2718919 (-) True AMCG00021090
AMCG00021091 mRNA upstream 900685 3255379 ~ 3265211 (-) True AMCG00021091
TU103965 other downstream 376019 1973160 ~ 1977968 (-) True G83313
TU104110 other upstream 102307 2457001 ~ 2459379 (-) True G83428
TU104173 other upstream 326866 2681560 ~ 2681762 (-) False AMCG00021090
TU104502 other upstream 2394087 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 4189798 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 10172399 12527093 ~ 12527694 (-) True G84814

Expression Profile