RNA id: TU104109



Basic Information


Item Value
RNA id TU104109
length 657
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G83427
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2516259 ~ 2516915 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCTTTAGAAAGTTTTCTTTAGTGGAGTTAaatgagcaaaataaaatgctgtccTGTTTCATAACTTTTCTCTAGATCCTATAATAAATTGGTTACATGATCTGAAagcaggaaaacatttttcaaaacctaTAGAGGTAGATAGGATGTTTTTATCTTATATATTGCTGACAGAAAAGGACTCCTTCATAAAGATACAATGAAGGCTTTTGTATGTTATAAATTCAATTATTACTTCAAAGCAAGTgtgaaaaaaaggagaaaagctgGTTTTAAGACTTTTACAGGAACTCAGACCATGAAGACAATTATTGGATACGTCATTCTTTCACGATAGGTTCTTTATCTTGTATTGGTTGTAAAAACTTAcatacatgttgtttttaaaaccacgGGGAAACCTGGCTATCAAATGTGCTACCTACTTCGCTACAATGACTGTCCCTGCACttttttacatgtgtgtttagATACTTTCATGCAAAAATGTGTACAACTGTAGAGTTTCTCGTTACACACCCCTTTTCAAAAACCTGTAAATTGACCGTGTCCATCGTCAGTTGTTCTGACCTGATTAGATGTGTACTGTAGTCCTGAGTTCACACgattggttttgtttgtgtacctgtttctttgcatttgattaaacactgtcaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104074 lncRNA upstream 223218 2278796 ~ 2293041 (+) True G83397
TU104040 lncRNA upstream 294536 2219093 ~ 2221723 (+) True AMCG00021076
TU104037 lncRNA upstream 314700 2201294 ~ 2201559 (+) True G83374
TU103991 lncRNA upstream 409353 2105182 ~ 2106906 (+) True G83338
TU103978 lncRNA upstream 432808 2083114 ~ 2083451 (+) True G83325
TU104126 lncRNA downstream 5948 2522863 ~ 2525979 (+) True G83443
TU104145 lncRNA downstream 90354 2607269 ~ 2607670 (+) True G83459
TU104186 lncRNA downstream 247878 2764793 ~ 2765004 (+) True G83493
TU104190 lncRNA downstream 420570 2937485 ~ 2937685 (+) True G83497
TU104211 lncRNA downstream 570779 3087694 ~ 3087909 (+) True G83516
AMCG00021083 mRNA upstream 4052 2506216 ~ 2512207 (+) True AMCG00021083
AMCG00021084 mRNA upstream 36227 2457929 ~ 2480032 (+) True AMCG00021084
AMCG00021079 mRNA upstream 139365 2370079 ~ 2376894 (+) True AMCG00021079
AMCG00021080 mRNA upstream 163189 2349679 ~ 2353070 (+) True AMCG00021080
AMCG00021081 mRNA upstream 238831 2248989 ~ 2277428 (+) True AMCG00021081
AMCG00021087 mRNA downstream 71253 2588168 ~ 2597708 (+) True AMCG00021087
AMCG00021088 mRNA downstream 135798 2652713 ~ 2670775 (+) True AMCG00021088
AMCG00021089 mRNA downstream 202541 2719456 ~ 2746353 (+) True AMCG00021089
AMCG00021093 mRNA downstream 948845 3465760 ~ 3471536 (+) True AMCG00021093
AMCG00021095 mRNA downstream 1066989 3583904 ~ 3587462 (+) True AMCG00021095
TU103781 other upstream 1589784 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 1280926 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 1610356 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 1714057 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 4598466 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 4598466 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile