RNA id: TU104145


Basic Information

Item Value
RNA id TU104145
length 402
lncRNA type inter_gene
GC content 0.26
exon number 1
gene id G83459
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2607269 ~ 2607670 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggagatgaccgtccccggaggtgggtgccatcatgggatcctgagcttcCCCAGATCTATTCAGctgtttaatactgtttattaggtttagtatttttacatttcttaaaatagaacaatttcaattttaatacttgtgattaaaatcatttagaatatcaattcttaaaatcacttaaaatttttaaaatcttgtgatttttttaacaaaactaaaacaataaactttaaaataaacgtgctcaaatcaaataaacaaaacgtgataaaagcaaaaactgcacaccaacaaaagagtcaaatacattgaaaataacagaaaatgcattagacaaattaaaaaaacaattaaaaagtaaaaataaaaaacaaacaaaaaaagtctaatgcattttaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104126 lncRNA upstream 81290 2522863 ~ 2525979 (+) True G83443
TU104109 lncRNA upstream 90354 2516259 ~ 2516915 (+) True G83427
TU104074 lncRNA upstream 314228 2278796 ~ 2293041 (+) True G83397
TU104040 lncRNA upstream 385546 2219093 ~ 2221723 (+) True AMCG00021076
TU104037 lncRNA upstream 405710 2201294 ~ 2201559 (+) True G83374
TU104186 lncRNA downstream 157123 2764793 ~ 2765004 (+) True G83493
TU104190 lncRNA downstream 329815 2937485 ~ 2937685 (+) True G83497
TU104211 lncRNA downstream 480024 3087694 ~ 3087909 (+) True G83516
TU104226 lncRNA downstream 746315 3353985 ~ 3354286 (+) True G83528
TU104333 lncRNA downstream 1181357 3789027 ~ 3789246 (+) True G83621
AMCG00021087 mRNA upstream 9561 2588168 ~ 2597708 (+) True AMCG00021087
AMCG00021083 mRNA upstream 95062 2506216 ~ 2512207 (+) True AMCG00021083
AMCG00021084 mRNA upstream 127237 2457929 ~ 2480032 (+) True AMCG00021084
AMCG00021079 mRNA upstream 230375 2370079 ~ 2376894 (+) True AMCG00021079
AMCG00021080 mRNA upstream 254199 2349679 ~ 2353070 (+) True AMCG00021080
AMCG00021088 mRNA downstream 45043 2652713 ~ 2670775 (+) True AMCG00021088
AMCG00021089 mRNA downstream 111786 2719456 ~ 2746353 (+) True AMCG00021089
AMCG00021093 mRNA downstream 858090 3465760 ~ 3471536 (+) True AMCG00021093
AMCG00021095 mRNA downstream 976234 3583904 ~ 3587462 (+) True AMCG00021095
AMCG00021097 mRNA downstream 1061388 3669058 ~ 3672076 (+) True AMCG00021097
TU103781 other upstream 1680794 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 1190171 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 1519601 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 1623302 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 4507711 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 4507711 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile