RNA id: TU104445


Basic Information

Item Value
RNA id TU104445
length 239
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G83716
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 4292126 ~ 4292364 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAGTAGCATCTGGCAACCCTGTAGGAGCCAATCAGACCAGAACAGCCACCGTGTTGTATCTGTTGCCATTATATAAGGGGGCTATTTATTTTGGCCGTCTCTCAAGTCTTTAATTATGCAATGCTTTTAATCACTGCCAATTTattgtataatgaaaatgttctgtgcAAAACCtgacacattaaaaacaaaatgtaacaacatAAATTGTATTAGCCAAAGAAATTAAAGTTTCAC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104432 lncRNA upstream 5526 4280108 ~ 4286600 (+) True G83710
TU104422 lncRNA upstream 26144 4262001 ~ 4265982 (+) True G83704
TU104425 lncRNA upstream 26144 4262001 ~ 4265982 (+) False G83704
TU104360 lncRNA upstream 356171 3935696 ~ 3935955 (+) True G83645
TU104335 lncRNA upstream 496515 3795344 ~ 3795611 (+) True G83623
TU104481 lncRNA downstream 342372 4634736 ~ 4730944 (+) True G83741
TU104492 lncRNA downstream 525733 4818097 ~ 4818329 (+) True G83752
TU104599 lncRNA downstream 2252167 6544531 ~ 6546601 (+) True AMCG00021133
TU104675 lncRNA downstream 2350818 6643182 ~ 6643523 (+) True G83900
TU104679 lncRNA downstream 2368365 6660729 ~ 6662819 (+) True G83904
AMCG00021114 mRNA upstream 58329 4202711 ~ 4233797 (+) True AMCG00021114
AMCG00021113 mRNA upstream 162753 4127070 ~ 4129373 (+) True AMCG00021113
AMCG00021112 mRNA upstream 376482 3906153 ~ 3915644 (+) True AMCG00021112
AMCG00021107 mRNA upstream 447837 3841600 ~ 3844289 (+) True AMCG00021107
AMCG00021108 mRNA upstream 483111 3804211 ~ 3809015 (+) True AMCG00021108
AMCG00021124 mRNA downstream 446777 4739141 ~ 4751627 (+) True AMCG00021124
AMCG00021123 mRNA downstream 459815 4752179 ~ 4760646 (+) True AMCG00021123
AMCG00021126 mRNA downstream 552387 4844751 ~ 4848172 (+) True AMCG00021126
AMCG00021127 mRNA downstream 598885 4891249 ~ 4894563 (+) True AMCG00021127
AMCG00021128 mRNA downstream 1476803 5769167 ~ 5787583 (+) True AMCG00021128
TU104395 other upstream 58370 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 162910 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 493343 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 3365651 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 2823017 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 2823017 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 4339363 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 5123903 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 6670784 10963148 ~ 10987174 (+) True G84657

Expression Profile