RNA id: TU104708


Basic Information

Item Value
RNA id TU104708
length 1203
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G83931
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6812232 ~ 6813434 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gttgggtaaaaaaatcccctttttaatgcatgaaaacattcttattaaatatatatataatttattgaaaaaagtAACACATTGCTTATAGATATATCAAATGATACCAATGTCTGTGGCTATTATCTGCTATTTGATACATaacatgaacatgttttttACAAGAGGTTCCTTCTTAACTGTTGGCTTCAACTATGAAATGTGTTGCCAGAGGAACTAAAGTGGGTGACAGAACAGGGAACAGAGATTTAGTAGTTTATATCAATTTTTGCATTAAGCAGAACAATGCAGCCAtattacagcttttaaaaaatgttttggtttctttggtTTTGCTTCCCTAAATTTCTGCTGaataatttcacattattttcttttaaaagcagtCTGTATAGCAAGTGAAgatatttaaacattcataCATAAAATGTCTTGTATTCTGTGTGGCTAATCAATTTCTAGTTTCTTAAAAGGGGCAGAGGTAGGAatagtttgggaacccctgaccACATAGTAATTAACTCTTATAGATTTTTggtttaatgtgtgtgtataaagttTTGGGACATGTCAGAAAGTAAAAGTATTTCTATTCTGTAAAGTCAAAGgaatgttattttcaaataagtGTCTATATGAAATGCTTCCTTAACCCTTCATTAAATATCAGGCATAAATCGGATAAATCGAATCAGGTATAAATtgagaacagttttttttccaaatgcactACATCCCCTTTCACtctaattttaatttcttacatTATATATCcctctgtgctgatttgttatCCAAAGTAGACATACGTTTTGACTTCTTCAAATAACCATTGCTCTACTTCAATTTTCATAGATTTAAGCTGTTGAACATGAATTTGGATTTACTCAGTTACTAAgtccatatatatgtatgtatgtaaatgtatatatttcctaTCAATGCATACAACTCATTAGTCATTAAtcttgttatgattattatgaatacTGTCAATGTATATTCATGGTTACACAATATATGCTGTTTTTAGAGCCACAAAACTAGTGGCTAGTTTTAATAACTTGATGGTATATCTCAGGTCGACTAATGTAATCTCACATCTGAACTTATTCAACATTCAATTTATTCAATATTCAACATAACTATagagaaatatacagtgagggaaaaaagtatttgatcccctgctgattttgtacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104676 lncRNA downstream 168709 6643222 ~ 6643523 (-) True G83901
TU104619 lncRNA downstream 175325 6569179 ~ 6636907 (-) True G83862
TU104642 lncRNA downstream 231813 6578854 ~ 6580419 (-) True G83878
TU104616 lncRNA downstream 280959 6530936 ~ 6531273 (-) True G83860
TU104586 lncRNA downstream 547661 6264336 ~ 6264571 (-) True G83839
TU104820 lncRNA upstream 304639 7118073 ~ 7122449 (-) False AMCG00021153
TU104821 lncRNA upstream 305409 7118843 ~ 7122449 (-) False AMCG00021153
TU104822 lncRNA upstream 305409 7118843 ~ 7122449 (-) False AMCG00021153
TU104823 lncRNA upstream 305409 7118843 ~ 7122449 (-) False AMCG00021153
TU104824 lncRNA upstream 305409 7118843 ~ 7122449 (-) False AMCG00021153
AMCG00021141 mRNA downstream 142020 6659537 ~ 6670212 (-) True AMCG00021141
AMCG00021135 mRNA downstream 269930 6538542 ~ 6542302 (-) True AMCG00021135
AMCG00021136 mRNA downstream 362060 6449423 ~ 6450172 (-) True AMCG00021136
AMCG00021134 mRNA downstream 390494 6397628 ~ 6421738 (-) True AMCG00021134
AMCG00021125 mRNA downstream 2075018 4728373 ~ 4737214 (-) True AMCG00021125
AMCG00021145 mRNA upstream 2501 6815935 ~ 6844522 (-) True AMCG00021145
AMCG00021154 mRNA upstream 239102 7052536 ~ 7063256 (-) True AMCG00021154
AMCG00021152 mRNA upstream 265744 7079178 ~ 7079639 (-) True AMCG00021152
AMCG00021155 mRNA upstream 274567 7088001 ~ 7101704 (-) True AMCG00021155
AMCG00021153 mRNA upstream 301986 7115420 ~ 7122491 (-) True AMCG00021153
TU104623 other downstream 265655 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 2060997 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 4130470 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 4352853 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 4834264 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 5713659 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 5906430 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 6813901 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 7056505 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 7236540 14049974 ~ 14051897 (-) True G85115

Expression Profile