RNA id: TU104762


Basic Information

Item Value
RNA id TU104762
length 1552
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G83976
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7051197 ~ 7056132 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcgGAGTCAATAGGGATCTATGAATGTGACAGATAAGCACAATTGTGGGTTCAAGCTGTGTTAGCAGGAGCAAAATGAAGTGATTTTCAATGCGCTTGGAAggaaacagcttttttttttttttttttttaaatagacatgcaagaacacagaaaagaaacatttaaaacaccaTATTTTAATAGCATTTCATTACAGCAGCACACAGCTCGACTACAGTCAGTACACGCCATGACACCATCTCCATTTATACATATACTTGCTTCACACACACTTCCACGCACTAGACCACTTgccctttaataaaaatatataagaaatacaaaaaaaaaaaaaaaaaaagattgccaAAGTGAAAACAGGAACTGCTTCCAAAATGttgtaaaagcaaacaaacaaacagctgggGAACCCTGAGAATGACCTCTGACCTTCGGAGAGGATGTCAGTCTGGCCAGTAACTGGAGTGAAAGCATCGTGTATCGATGACACATTTACATGCCAGTGGATTCTCCCCTCAAATCCTTCCCTTTTAAAAACCTGTTTTCTGCAGTGGTGTCCGAATGCCATCCTCCACAATCACAGGGTGTCCTGCTTTGTTTCCCAGCTGGCTCTCACAATAACTTTTACTGTCCATTGAATTGGTACGATGCAGAGACCTGCATCACCCCCAGGTGCTGGACCTCGAGGGATCACATCGGGACACTACTGACCTACTAACAGAAACTACTGCCCACAGCCGGCGTCACTGTCATCACTCCAACGATCACTGAGCACGATTATCTACTAcagtacataaaaataaactactttCCAAGACAATATCAAATGTAACaaattttgtattctgtataaacttcaaaaaatgttccacctcccttttttttttttaaacatcaatttACAAGTAGGCCAGACAGCAATATTTACAGTAACAAAAGCTTGAATATACAGTCCCTCAAAGTAGGGTTGGCCCCTTGTTTCACTGTCAGCTAAAGAAACATGGACATCTTTGAAAGCTACCTGAGATGTAAGGAGCCATTTCTTAATATCTTAATGAAACCCCATGATTCTGTTATCCCTTTTCTTGCAGATTCAAACAAActgataacaaaaaaaaacaacactgcagaAGTCCCTCACTAGGTTGGTCCCACAAGTGAATTGAACCACTCAGTGTCAGTCCTGCACAGGCAGCGAAGCCCACAATGTACCGAaccagaaataaattaaaaatgtgacctATGTGGTACAGCggaattacaaaaataaattattaatcgttacaaaaaggaaaaactctCTCCCTGTGGATCAGTACATTTGGTTTCCTCTGCCCTCAGTCTATTTTCTTCGTCCGCAGTCTGACCAGATCCAGAATGTACTTGTAGTTGGGGACGGCGGTGTAGAACAGGAGGGCGAGCAGTTTCCCGTGGGACATCGTCAGCAGCGTCTGATGGCCCGTGGCCCACACCCGGTACCAAGGCCCATAAAACGGGTCCGACACCGCCGGGCACAACATGTTGTTCAGGTTCACCTCCAGTGGATCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104690 lncRNA upstream 369280 6679203 ~ 6681917 (+) True G83914
TU104679 lncRNA upstream 388378 6660729 ~ 6662819 (+) True G83904
TU104675 lncRNA upstream 407674 6643182 ~ 6643523 (+) True G83900
TU104599 lncRNA upstream 504596 6544531 ~ 6546601 (+) True AMCG00021133
TU104492 lncRNA upstream 2232868 4818097 ~ 4818329 (+) True G83752
TU104771 lncRNA downstream 29086 7085218 ~ 7088239 (+) True G83983
TU104772 lncRNA downstream 29086 7085218 ~ 7086327 (+) False G83983
TU104815 lncRNA downstream 59249 7115381 ~ 7121237 (+) True AMCG00021150
TU104856 lncRNA downstream 340928 7397060 ~ 7398518 (+) True G84049
TU104868 lncRNA downstream 369799 7425931 ~ 7426347 (+) True G84061
AMCG00021148 mRNA upstream 10346 7026401 ~ 7040851 (+) True AMCG00021148
AMCG00021147 mRNA upstream 59209 6979040 ~ 6991988 (+) True AMCG00021147
AMCG00021146 mRNA upstream 93634 6956712 ~ 6957563 (+) True AMCG00021146
AMCG00021144 mRNA upstream 126608 6915817 ~ 6924589 (+) True AMCG00021144
AMCG00021143 mRNA upstream 140783 6894003 ~ 6910414 (+) True AMCG00021143
AMCG00021150 mRNA downstream 55865 7111997 ~ 7118948 (+) False AMCG00021150
AMCG00021149 mRNA downstream 66442 7122574 ~ 7128057 (+) True AMCG00021149
AMCG00021151 mRNA downstream 72531 7128663 ~ 7146664 (+) True AMCG00021151
AMCG00021158 mRNA downstream 304228 7360360 ~ 7390841 (+) True AMCG00021158
AMCG00021160 mRNA downstream 348020 7404152 ~ 7420194 (+) True AMCG00021160
TU104395 other upstream 2817441 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 2921981 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 3252414 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 6124722 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 59249 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 59249 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 1575595 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 2360135 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 3907016 10963148 ~ 10987174 (+) True G84657

Expression Profile