RNA id: TU104910



Basic Information


Item Value
RNA id TU104910
length 448
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id G84095
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7657193 ~ 7700683 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGACATGGATGTATCTATATCTCGATCTTACATATGAAGTTAAGTTACGCGAATAAGGCGGTGTGGTGGTCTCGTCAGCGGGGGATTTGATGCCAACCCCGTCTCCCGCAGACGTGCTCCTGCCCATCTCTAGCCCCCAGACCCGGGGGCTGATCGGCAGGCTGGTGGCGAGGGTGTCCAGCCAGCTTCACTTCCTAAAGTCTGGGCAGATGACACAGTGCGGGGTAAAGCGCCGTGTCGGACAGGCGTTTCTACAAAGACGGGAGTTGTTACAGTACAGGACTTCgtggaattaaaaaaagagggATGCCTTTTGCAGTGTTTGTGCTGAACAGGAGTGTACGCTGGACAGAAATCCAAAGGATCTTTGACATCTGCAGAAAGGAATGTCTCAACAAGAGCAGCTTTCTAAAGTCAACACAGACAATCTGTGTGCAGTCCGCGTCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104903 lncRNA upstream 97073 7553620 ~ 7560120 (+) True G84090
TU104888 lncRNA upstream 145205 7511369 ~ 7511988 (+) True G84078
TU104868 lncRNA upstream 230846 7425931 ~ 7426347 (+) True G84061
TU104856 lncRNA upstream 258675 7397060 ~ 7398518 (+) True G84049
TU104815 lncRNA upstream 535956 7115381 ~ 7121237 (+) True AMCG00021150
TU104988 lncRNA downstream 277534 7978217 ~ 7979826 (+) True G84155
TU105006 lncRNA downstream 339541 8040224 ~ 8043169 (+) False AMCG00021180
TU105048 lncRNA downstream 501155 8201838 ~ 8207378 (+) True G84196
TU105099 lncRNA downstream 674648 8375331 ~ 8376038 (+) True G84244
TU105139 lncRNA downstream 855278 8555961 ~ 8558418 (+) True G84276
AMCG00021165 mRNA upstream 158153 7493979 ~ 7499040 (+) True AMCG00021165
AMCG00021159 mRNA upstream 185219 7449118 ~ 7471974 (+) True AMCG00021159
AMCG00021164 mRNA upstream 221175 7430429 ~ 7436018 (+) True AMCG00021164
AMCG00021163 mRNA upstream 226789 7424663 ~ 7430404 (+) True AMCG00021163
AMCG00021160 mRNA upstream 236999 7404152 ~ 7420194 (+) True AMCG00021160
AMCG00021167 mRNA downstream 61338 7762021 ~ 7766846 (+) True AMCG00021167
AMCG00021168 mRNA downstream 86314 7786997 ~ 7801273 (+) True AMCG00021168
AMCG00021172 mRNA downstream 171473 7872156 ~ 7906034 (+) True AMCG00021172
AMCG00021170 mRNA downstream 224500 7925183 ~ 7931516 (+) True AMCG00021170
AMCG00021171 mRNA downstream 233672 7934355 ~ 7949586 (+) True AMCG00021171
TU104813 other upstream 535956 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 535956 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 3423437 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 3527977 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 3858410 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 931044 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 1715584 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 3262465 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 4374662 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 8362917 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile