RNA id: TU104988


Basic Information

Item Value
RNA id TU104988
length 1610
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G84155
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7978217 ~ 7979826 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTagtttaaaaattgtattattattaatggtacggtttacatttaacaatgctttttcataataaaaaaacaaaaatcaaacttCCATTTCCAGTTTTCTCTCTAGGTATTAACAGAATAGGTTTCAAATAGGGAGGCTTTATTCAGAAATGGTTATggattaaatatgaaatacatgattacagatacaaaattacatatatCACCATTGGAAGAACTGTACTTCACATAattctaataaaatatttatacatttttgtatttttggcatatgaaaaaaatattttcagtatatAAAGTTATCAAGCACTTAATACATCTCTgagcgttttttttttgttttttttggtacaaGTAAATGTCAAATGCAGTAAATAATCATAAAGCAGCTTCATATAAGAATATCCAGTTCTGGTTTACTAAAAGCAAGAACCAGCTTTAATTTCAGAACATTACAGAGCTGTTACAATGGATTAAACTGAGCATTGTACCCTAAGTTGGCATGAGATCTTCATATCTAATGCCCAGTAAACAGCAACCAAATACAAGATAATAGTTAAATTGCATATTTGCCATGGCAACCAAACTTAGAAATTGGCTAGTATTTAACAGAACTCAGTCCAAGGCATTCCCTGTGTGTGCGCGTTTCGTGCGTTTCTTTGTGTccattaatttatgtaatttccCCTTTATGacgaataatacattttcttacaggATATCAACTAAAATATAATTGGTAACAAATGACCAAATCTTGGGAACTATATGGGAGGTTAAAGCTTAATCCAGCTCAGTCAAAACACCAACAGATTTGGTGATTTCCGTTTAGTACCTTTCAAGATCTCATCCTACAGATtctcagtaaaataaaaaaacggtTCTGTCCTTGCTCAACCAAAATTTCTCAGGGAGATTGTGCCTGAAAGCCGAGTGCAACCCATCATGCCTTTCTATAAATCATTTACAAGCACTGgaatcaataaaacaatgctaAAAAGTGTACTTTTTATATTCTATAACCCTCAAAAAGACTGCAGGCCtatttttgatttgtgtttgttactgCTTTCTTTTGATGACAACTTACAGTAATTAAAGGTAGTCTTAGCAAAATTAGCACAAATAactattattcaaaataataaacaggatCATTAAAGTCAAATAATACTATATAAGGTTAAGTATCATCCGAAGTTGCTTATTACTTCATATGCAATGGATACACTTTATATCGTTAAGACTGTGACAAAAGGTGCTGGAATGTAAGATCCCCTTTTGCAGTAGCAACAGATCAGTGTAATACTCTCAGTTTCtctaacagaattaaaaatatagaaacattACGATTAATCAGAATGAACAAAACACTGGCAAAGGTATACGTTCTTTGAAgttatttcagatttaattactGAACTATCTTATACCTCTTTTGCACCAGTATAGGCATGTATTGCAGCATAGGATTTGTAATAATACTAACATATAGCCACTGAAGGTTTGTTTGAGTGTTCACTGTTTTAAATCCAAGTTCTGATCAGGTTGCGTTTTCCATTTCATGGTAATACAGCAGTCTGTAATGCAGCTCTAACAAAAGCNNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104910 lncRNA upstream 277534 7657193 ~ 7700683 (+) True G84095
TU104903 lncRNA upstream 418097 7553620 ~ 7560120 (+) True G84090
TU104888 lncRNA upstream 466229 7511369 ~ 7511988 (+) True G84078
TU104868 lncRNA upstream 551870 7425931 ~ 7426347 (+) True G84061
TU104856 lncRNA upstream 579699 7397060 ~ 7398518 (+) True G84049
TU105006 lncRNA downstream 60398 8040224 ~ 8043169 (+) False AMCG00021180
TU105048 lncRNA downstream 222012 8201838 ~ 8207378 (+) True G84196
TU105099 lncRNA downstream 395505 8375331 ~ 8376038 (+) True G84244
TU105139 lncRNA downstream 576135 8555961 ~ 8558418 (+) True G84276
TU105163 lncRNA downstream 607772 8587598 ~ 8588963 (+) True G84298
AMCG00021171 mRNA upstream 28631 7934355 ~ 7949586 (+) True AMCG00021171
AMCG00021170 mRNA upstream 46701 7925183 ~ 7931516 (+) True AMCG00021170
AMCG00021172 mRNA upstream 72183 7872156 ~ 7906034 (+) True AMCG00021172
AMCG00021168 mRNA upstream 176944 7786997 ~ 7801273 (+) True AMCG00021168
AMCG00021167 mRNA upstream 211371 7762021 ~ 7766846 (+) True AMCG00021167
AMCG00021174 mRNA downstream 52179 8032005 ~ 8035358 (+) True AMCG00021174
AMCG00021180 mRNA downstream 60344 8040170 ~ 8043299 (+) True AMCG00021180
AMCG00021179 mRNA downstream 69005 8048831 ~ 8074602 (+) True AMCG00021179
AMCG00021181 mRNA downstream 95441 8075267 ~ 8091708 (+) True AMCG00021181
AMCG00021177 mRNA downstream 125582 8105408 ~ 8105869 (+) True AMCG00021177
TU104813 other upstream 856980 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 856980 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 3744461 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 3849001 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 4179434 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 651901 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 1436441 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 2983322 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 4095519 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 8083774 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile