RNA id: TU104989


Basic Information

Item Value
RNA id TU104989
length 1574
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G84156
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7978250 ~ 7979823 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNGCTTTTGTTAGAGCTGCATTACAGACTGCTGTATTACCATGAAATGGAAAACGCAACCTGATCAGAACTTGGATTTAAAACAGTGAACACTCAAACAAACCTTCAGTGGCTATATGTTAGTATTATTACAAATCCTATGCTGCAATACATGCCTATACTGGTGCAAAAGAGGTATAAGATAGTTCagtaattaaatctgaaataacTTCAAAGAACGTATACCTTTGCCAGTGTTTTGTTCATTCTGATTAATCGTaatgtttctatatttttaattctgttagaGAAACTGAGAGTATTACACTGATCTGTTGCTACTGCAAAAGGGGATCTTACATTCCAGCACCTTTTGTCACAGTCTTAACGATATAAAGTGTATCCATTGCATATGAAGTAATAAGCAACTTCGGATGATACTTAACCTTATATAGTATTATTTGACTTTAATGatcctgtttattattttgaataatagtTATTTGTGCTAATTTTGCTAAGACTACCTTTAATTACTGTAAGTTGTCATCAAAAGAAAGcagtaacaaacacaaatcaaaaataGGCCTGCAGTCTTTTTGAGGGTTATAGAATATAAAAAGTACACTTTTtagcattgttttattgattcCAGTGCTTGTAAATGATTTATAGAAAGGCATGATGGGTTGCACTCGGCTTTCAGGCACAATCTCCCTGAGAAATTTTGGTTGAGCAAGGACAGAaccgtttttttattttactgagaATCTGTAGGATGAGATCTTGAAAGGTACTAAACGGAAATCACCAAATCTGTTGGTGTTTTGACTGAGCTGGATTAAGCTTTAACCTCCCATATAGTTCCCAAGATTTGGTCATTTGTTACCAATTATATTTTAGTTGATATcctgtaagaaaatgtattattcgtCATAAAGGggaaattacataaattaatggACACAAAGAAACGCACGAAACGCGCACACACAGGGAATGCCTTGGACTGAGTTCTGTTAAATACTAGCCAATTTCTAAGTTTGGTTGCCATGGCAAATATGCAATTTAACTATTATCTTGTATTTGGTTGCTGTTTACTGGGCATTAGATATGAAGATCTCATGCCAACTTAGGGTACAATGCTCAGTTTAATCCATTGTAACAGCTCTGTAATGTTCTGAAATTAAAGCTGGTTCTTGCTTTTAGTAAACCAGAACTGGATATTCTTATATGAAGCTGCTTTATGATTATTTACTGCATTTGACATTTACttgtaccaaaaaaaacaaaaaaaaaacgctcAGAGATGTATTAAGTGCTTGATAACTTTatatactgaaaatatttttttcatatgccaaaaatacaaaaatgtataaatattttattagaatTATGTGAAGTACAGTTCTTCCAATGGTGatatatgtaattttgtatctgtaatcatgtatttcatatttaatccATAACCATTTCTGAATAAAGCCTCCCTATTTGAAACCTATTCTGTTAATACCTAGAGAGAAAACTGGAAATGGaagtttgatttttgtttttttattatgaaaaagcattgttaaatgtaaaccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104961 lncRNA downstream 46734 7924021 ~ 7931516 (-) True G84132
TU104925 lncRNA downstream 172713 7801129 ~ 7805537 (-) True G84108
TU104908 lncRNA downstream 334250 7559855 ~ 7644000 (-) True G84093
TU104906 lncRNA downstream 418130 7553620 ~ 7560120 (-) False G84093
TU104901 lncRNA downstream 466261 7511561 ~ 7511989 (-) True G84089
TU105033 lncRNA upstream 84708 8064531 ~ 8116827 (-) False G84184
TU105039 lncRNA upstream 92270 8072093 ~ 8074698 (-) True G84188
TU105031 lncRNA upstream 129828 8109651 ~ 8116827 (-) True G84184
TU105035 lncRNA upstream 129828 8109651 ~ 8116827 (-) False G84184
TU105055 lncRNA upstream 221936 8201759 ~ 8207550 (-) True G84203
AMCG00021175 mRNA downstream 2129 7953072 ~ 7976121 (-) True AMCG00021175
AMCG00021173 mRNA downstream 63951 7906158 ~ 7914299 (-) True AMCG00021173
AMCG00021169 mRNA downstream 162139 7815128 ~ 7816111 (-) True AMCG00021169
AMCG00021166 mRNA downstream 486336 7482573 ~ 7491914 (-) True AMCG00021166
AMCG00021162 mRNA downstream 498464 7469757 ~ 7479786 (-) True AMCG00021162
AMCG00021176 mRNA upstream 2577 7982400 ~ 8024402 (-) True AMCG00021176
AMCG00021188 mRNA upstream 285126 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021192 mRNA upstream 382108 8361931 ~ 8372742 (-) True AMCG00021192
AMCG00021193 mRNA upstream 400166 8379989 ~ 8515922 (-) True AMCG00021193
AMCG00021191 mRNA upstream 561818 8541641 ~ 8548618 (-) True AMCG00021191
TU104623 other downstream 1431673 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3227015 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5296488 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 5518871 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 6000282 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 4547270 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4740041 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5647512 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5890116 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 6070151 14049974 ~ 14051897 (-) True G85115

Expression Profile