RNA id: TU105055


Basic Information

Item Value
RNA id TU105055
length 5792
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G84203
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8201759 ~ 8207550 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ccgTTAATGTGATCAAAATATCTCTGTATTCGTATAACAATCACAGTTTGCACAAGATTAAGAGAAATAGAAACCAATGGAGGGTTaagcatgaaaaataatttatttaaatgatataatTTCATCACATAGACAGAAAGTAGCTGCTACAGGGTCACAGCTACATTTAATACTGCTGGAGcgttttaatatttctttcctataagaaaaaaaaatgccattgaTATTTAGTACATATGAATTTGCTTGACTGTTAAGCCCATGGGAGtaattttaaagcttttcagtttttgtagTCCATTCCACATGTTTTTGGTTGCAGTTCTACTGCAGGATTAGTTTATGGCACATTACCTGTTATATTTCATTAGTACCCCTGCTTTGATTACTTACAGCACTATGTACAATATACTACTTTACACTGCTTTCATTCTGCAGTACTATAGCAACACTTTTTTAAAGGGTTCTCCTGACAGAAACATACAATATTCAGAAACTATACAGTACAAATTAACAGAGGAATTGACCTTCTGTGGGAGCCTGGCTATTTTGCCTCTTGTGGCCAATTTTGAACCCAGACAACATTTCACTGGgaataaagaaaagctttaaaagGTGTCCTCCAAGGTGTACAACAGAGCTAAAGATAAAGGGAGGCAGGCTTCATTAGTCACATGGGGGTCTGCAGCTCTGTGGTGAACATAAATTGTCACCACCAAACTGAGGGGAATATAGGGAGACCCAGGACACCTTTTCTGTTGGATACAATCATCTATTCCCTGCAGAGATTAACTACAAAAGTGGCTGCCAATTGCAAACTCCAAACTGACCTATTTGACAAAAGCATGTGGGAGAAAGAGAAGCAGAAGACACATAATTAAGAGGAATCTGGTCAACCGAAACCAAATGCATACACAGATCAGCTCAAAGGCTGATATCGATTACAATCCTGTCTGTAACCTTTTTTCCTTGGCAATTCCAAGAATGCTTGACCGTATTCTGTTAAAAAACGCAGGGGACTTTAGGGAGAGCAAGGGAAGGTATTCAGAAGTACAGGAGAATCAGGATTAAAGACGAAAGCTCACCACAGTCAAAGCCTCTCATGTTAGATCACCCAGCAGATTGCCCTGGTAAACTTTCCTGGTGGGCTTATCTTGATGGAGCAAACTGAAGGGAACAAACTCCAATACAATACATCCTGTTCATGTCTCGCAAATCCACTCCAAGGAAAATGCATCTCAAACAAGCTCAACATAAGTCTCCATGATTGCCCTGTGAGCTTGTCTTAAAATGTTCAGTAGAAAAAAGGTGCATCATATTACTATACACACATCCCTGTCTCTAGAGACCTATATGTTTGTTCAGAGAGTTCAATCTGAATTGAACCTAATGAAATGGCAACTGAAGGAAACCACCAAAGGAAGTCTGGCTTGAAACTTTTTGCTTGGCTTGGCCCATTCAGGGAACTCCAACACATTGCCTGTAACCTACATTCCTAAATGCAAGATATAATAAATAGGTGCAGGGAAGTAAGACTTTTGAAGACTCTTTGATATTCCACTTTTTAGTAGTGTGTCTtagtttgttattattagtactgAGTTGTTTTATATGTGCTGtgaaactgttaaaaatatgaCACAAGCACAAAATCCTACgaagttaaaaatatacaaataagagAGAGTAGTATGTTACAGACAGAGATGTGGAGTGGTCAGACAGTGTTCtgttcaaacaaattaaaagcaacACTGATCTGGATTTTCTATTACTGTGAAACACAACTAGGCTTTGGAATGTGAAAAGGCCATTTAGCCCGCTACACATCATTTGTTTCTGCACGTTTTGGTCCAAGAATTTGAagtgttaatgtttaaatttaatttgggCAAGGAAGAAAGGCCAGTGTTTGATAATTAGTCAGAAATGTCTTCATGCTCTGCAGACGGTTTAAGATGCACCTTTTAATAACGCACTCATCGGTCATCGTCTACATTGATGACATTATGATctactcctcctccctctcccaggTGCGCCAGgtgctccagtgtctgctgtgCAACGGACTGTATGTCAAAGCGGAGAAGTGCGAGTTCCACCGCCAGCGCGTGGGCTTCCTGGGCTACGTCATCGATGCCAGCAGTGTGCACATGGACCTGGAGAAAGTGAGCGCCGTCACTGACTGGCCGCAACACCCCCactgtgaaggagctgcagtgcttcctgggctttgccaacttttatctgtgttttttctgtaattacAGCTATCTGCTATCTGCTATCCTCTCTGTTAAAGGATCCCCCCGGACTTTCACCTGGACAGACTGCCGCATTCGCCCATCTGAAGACACTGTTTATGACAGCCCCCTTCCTCAGACACTCTGACCCCTCTCTCCCATTCATCGTGTAGGTGGATGCCTCTGAATCCGGAGTGGGAGCTCCCAGCGACACGGACAGCCGCCTAAGCTTCACCCTTGCGCTTTCTTCTCCCGAAAGCTGTCACCAGTGGAGCGCAACTATGACATCAGCAACCGTGATCTCCTCGATGTCAAGCTGGCTTTCAAGGAGTAGAAACACTGGCTCCCTTCCTGGTTCTGACTGACCACTGGAACTTGGAGTACATCCAGTCCAAAGTTTTGTTAGTGTAAACAACATTTCCTAGCTGTCTCCCCGTGCCTTGTTTAGCTTTGGTTCTACCGTGTATCCTTGACCTCCCGCTTgacttcccgaccacgactttgatcttcccctgattgcctgtttgcatgatcgcccgacccttgcACATGACCACGACCACAACCACATCCACGCCTGTCTTGACTATCCCAccagcaccgcaactgggttcccctgttcccgtgcccgtGGTACGTTACACCTTCGAGTGAAGAAACGCTTTCCAGTTAGCTTTCATTCACGTCCTGTTACAATACTGTCATAATAGATTTCAAGTCAAATAACAAATGGCACTGAGGTCTTCCCGGCAGACCTATTAAGGCCCATCGAGCTCAGCTTATGTAAAATTATAAGAAATCCACTGGCAAGGGATCAGACAGGTGGCGATTGGGCTTCTGAGTTTataaaaaggcatttgaaaGGATGACTTCTCAAATCAGTCAGACAACactttaaaatcagattttaataaaaaacacatggaACACATCTCCCCACTTATAATGAATCAATTCTTGGTTATATCTACATGCCTAAATCCCTGGATTGTTTGCACTAGCCGTAAATCGTAAATGACTTGCGAAGGTAAGTGGTGCAATAGAGTGTAGAGAAAGGCTTTCCAAACAACATAAACTTTAAGAAATGCAAGAATCGCTCAAATCTCTTCACAAGGAATAGCAGGGAAACAGTCTATTTAACAGATGGACCTGACCGGAGTGGAAATGCTATTCCTGATTCAAGTCACTACCTGAAGCTTTCAAGAGCATGAAGTCATGTATGTCTTAGAAGGGTGATCTGTGAGCCTTAATGCCTCTTTATTCTTGACAAAAGCACCACTCCACGATAATTCTGCTTCTCTTTCTTCCAGAACAGTTATTTTCTTCTCACAAGGGATTAAAATACAGATGGAGCACATTTAAgagtagtaataattataatagtaaccATAATAAAAAAACCTCTCTGCTAAGGAAGTGCAATAccaaggcatttaaaaaacacagaggCACTAACGCCAGAGTACAAggcaaacaaacactttttttttgtatcattcactaaatatttaaaacaagcGTCACTCACTGTTTTTAGTTACTGGATAcctgaattactttttttgtctttttttaatccaggGTAAATTGTCTTGCTGTTATATAGTCAAAAACGATAGCAACCCAAAGAGCTGTTTTCTGAGTTGGTAAATGTTTTCAAGGTGGTGTCCAGACTTGATAGCACCAGGAGCTTCTGTTGGAATAGAGAAAGCCAGTGAATGCGGCCCATTTCGTCTGTGTTTCATGAATGGAAAAGTGTGTTGAAAGGTCCAGATGGAGCTATATTGCATCCTCAGGTAGAGCAAGATGTTCTAGCTCACCACTGTTGCACTGTACCGgcatcaaacatttaaaatcaaaataaaaccataatgcAAGGCCCATATTCCATACATTCCCTTTAAAAATAGACTTCAGTAAGAACTGGAAATTTTCCGTACTAAAGAATTGCTACTTCTTTTGCTTACAACTTTTATTTGAGACTCCATTCCTTCTTGTTTcccaattaacaaaaaaaatgaagagaaacaagattgcaataaaaaaataaattagtaaaggAACTGCCGAGAAGCCTTTCCCCAAGTCGTTGATATGAATGCATATCCCTCTCATGACTTCTGTTTCTCAAAGTAAATCGATGTCCAGCTGCAATGCATAGGTTGTATTACAGTCGAGTGAATGTAACGACGAATAGGAGGAGCTGCTGAAGGTCAGCAGGTATGGAGTCCGTGATGCTCTGAAAGCCTTGTCCAGCCCGTGCCGCACAATCATGCAGGTCAGAGGAGTGCAGTAGAAAGGATTTTGTAAGGGTCATCTCTCAATCAAAAAGGGCAAGTGTCATTCTTCTCCCTGATGCTTGTTGTTTTACAAAGCTCGAAAATTACTCACCTCAAAAATTAAAGGGTCACCTGAGTGCAAGGAAACACAAAAAGcccttgtatatatattttgcttaccatgaatttgaaaaagaaaactaaaaacttgaCCAGTAGGCCAACAGGTGGAACATCTCCAGTCTAATGGAAACAGTCCCAGTGTCTCTGGAACACACTATAGCTGATACCAAGGACACACAGATCTCTAGCACACCAGTTACCACCAAAATATTCGTACCCTTATGACCCTTTAATTTTGGGGGAATTTTGATATAAGTATATTCGGCATACATACATTAGGCAGTGTGGAGCTCCATTCTAAACATTTGAGCTGTTTTGCATTACCATTTGTGACAAGTGTCTTTGTTGCCAAGTTCAATGTTGTAATCACTTATGCAATTTTGGCAGCCCTTGTCACACACAAGTATATATACAGGTGCACTCCGCTTCTAATGGAGTTTGTGAGACCATATCTGAAAAGGCAGGTCCCAACTAAATACCATGGGTTTCAAAGGGGAATTACTCTGGTTAAAACGTActcatttgtaatttatatttcttttaaaacataaatgtattgtattctaggcagtttttttttttttttataaaacttaCATCTGggacagtaaataaaaaaagtgggCTGGAGTTTGGCGCCAATAATGTCAACAAAGATGCTCCTGTAGTACGAGAATGAAAAGAACAGAATAGAGAAGTGCTCAGCATTGAGCAAAAAcgtaaattaataaacaatatttcaaatggggaaaataaatgtaattccaccatgaaaaaaaaaatagcttaccaaaaacaaaagtaaacacaATCATGAAAAACAGAGGAAAGATTGTCAGACAATTTGAACAAGTCAGGAGTTAAATCGccaaacaaatctgaaaatgtatgcttTCATATGTTGTTGATGTTATTAAACTAATACTGGTCCCAATATGAATTTAGAGAAAATGACGGCATGTAGTTTATAGTCAACTCATGTTGTTTGGCAATTACGTTTCctggtttaattatattttaagtaattgtgGCGgcagcattttcattattatcatgGTACAAGGTAtttcatatataatgtaataatttcctTGGTCCCTTGGGGTACATTACAAGTCGAGtgcacctatatatatatttatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105033 lncRNA downstream 84932 8064531 ~ 8116827 (-) False G84184
TU105031 lncRNA downstream 84932 8109651 ~ 8116827 (-) True G84184
TU105035 lncRNA downstream 84932 8109651 ~ 8116827 (-) False G84184
TU105039 lncRNA downstream 127061 8072093 ~ 8074698 (-) True G84188
TU104989 lncRNA downstream 221936 7978250 ~ 7979823 (-) True G84156
TU105170 lncRNA upstream 380019 8587569 ~ 8589053 (-) True G84304
TU105171 lncRNA upstream 381670 8589220 ~ 8590488 (-) True G84305
TU105173 lncRNA upstream 494029 8701579 ~ 8701918 (-) True G84307
TU105177 lncRNA upstream 533611 8741161 ~ 8741413 (-) True G84311
TU105216 lncRNA upstream 628725 8836275 ~ 8840659 (-) False G84332
AMCG00021176 mRNA downstream 177357 7982400 ~ 8024402 (-) True AMCG00021176
AMCG00021175 mRNA downstream 225638 7953072 ~ 7976121 (-) True AMCG00021175
AMCG00021173 mRNA downstream 287460 7906158 ~ 7914299 (-) True AMCG00021173
AMCG00021169 mRNA downstream 385648 7815128 ~ 7816111 (-) True AMCG00021169
AMCG00021166 mRNA downstream 709845 7482573 ~ 7491914 (-) True AMCG00021166
AMCG00021188 mRNA upstream 57399 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021192 mRNA upstream 154381 8361931 ~ 8372742 (-) True AMCG00021192
AMCG00021193 mRNA upstream 172439 8379989 ~ 8515922 (-) True AMCG00021193
AMCG00021191 mRNA upstream 334091 8541641 ~ 8548618 (-) True AMCG00021191
AMCG00021209 mRNA upstream 350682 8558232 ~ 8580015 (-) True AMCG00021209
TU104623 other downstream 1655182 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3450524 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5519997 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 5742380 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 6223791 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 4319543 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4512314 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5419785 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5662389 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 5842424 14049974 ~ 14051897 (-) True G85115

Expression Profile