RNA id: TU105139


Basic Information

Item Value
RNA id TU105139
length 2438
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G84276
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8555961 ~ 8558418 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TaccagattaatttatttttttctgcttcaggACTGGTATTCCTCCACTATAAAAATGCTATTTTTCTTAAAAGTTACCCATGTGGTACATACTGATAATACAAGTAACTTGGTTTGAGGGAGGTAAAGgattaaagacaaaaacaaattcaatcaAACTGGGGGTTTTGCTGCCACTGAcatatattgaatatttatatgATTCGATATATCCCAATTTTATTATTCACATACACAGCTGCCTATTAATGTATAcaggttttgtttagttttgttctatatCTTGAAATTCTAGACAAATAAGTGCATATTTTACTTTGGCAGCTATTTAAAAAGATCCAGTATGCAAAACACTTGGTAAAAAGTCTCTGCCCCTCTTAACACAAGCAATTGAACAATCAgtgcatatgtatgtaaataattatatatacatatataattattttcttaatacaaATGGGAGTTAATAATGTTAACCCATTTGAATGACCTCTTCAGTACACCTGCATCAATAAAGCTTTAGTTTCCATCATAGAGTTCTTTAGATTTCAAGGTAATAAAGCAAGCTAGGTTTtgaactttaaattaatttaattagaattattTACAGAGTCAAGGACTGTCTAACAGTagcgcatatatatatataaactatatatatatatatatatatagtttaatttcaCTATAAGAGAATAGAATCTCTTTAAACTGCAATActaagtaaatatacattttaaaaccaataatGGACAATAGTTCGCTAAGTAACAAAGCTGGTGTTCCCCTCAAATACAAATCACTGGAGTCCAGCAATGCAATCAATTTCTAACCACTCGTGGTTGAGCGAGGGGGAGGGCTCATTAACATTTGCTATGATGTGtaataatacagataatacACACCTTCCccttaaaaaacagaaaacaaacgaACTTTCAAAGAAACCAAACCCGAAAAGTACTACTTTTCAATAACAACCTTTATCTCTTTCCATTTATAAAACTTGAGCTTTAcactacataaaataattatatcttaCAACAATCTATAGAACTTCAAACAGTAAAATAGGCTTTCTGAGGTAATTACAGAATTACTGTacttgtaaaaaacaaataaaaattcCACCAAAAACAGATCTGTAGAGATTCCTTCTGATGTTTAACTGCAGTTCCCCAATTTACAGTCTTCAAATGCTATCCATCTAAACTACTGagagtaaaaaaattaaaataaaaaggggggaGGCAACAGTTAAACAGAGACAGCCTGTCTTGCTCATAATGCCACGTTCAAAAACAGTTCAATACAAACAATCCATTTAAATCGGATCCTACATAATCAAGGCACAGCATAAATCTAACCCAACTCCTAGACTTCTTTCAAATAAAAGCTGATGGCTCTTCgtattaataaaaatagttCCCAAGGATCAGTTTGCTGCAAGAAAAGATTCCACACTGTACTTTGGATTGAACTTTCTATGAGGAATAAGAAGCTTTGCTTGAATTTACATTGCTTTAACCTCAATGGACCAAAGGAAGATCATCCACACTAAAGCTAAATTTGAAGGACCCATTTTTAACTAAATCtatacaataaatgaaaaattaaattggaCACTTTTTTCAAGTTATAAGAATGcttgtaattgaaataaattaaatgtcatttggaataaaccaatcagtgctatttttttttttttttttttttttttttttttttttacacctggcgtataactgtatattattttatgagaGAAATTAGGAGAAATGTGTTCAAACTCTAGGAACTGTCCCTAAACTGATTTTCTGAATCCTACCCCAAGATCCCAACCACATCCATCCTGTGCAATTCAATCCAAATAAACTATTTCAAGCAGCACTAATTACATCATGTGTTGTATAAGacataagaagaaaaaataaaacccatatttgtcacaaagaaaacagtaacttgccaaaaaaatatatatttctggtCTCCCCCACCACTCCCCCCCATACGTTCTGCGATTACTGGAAGACATAATTCCACACTTCGAGGAGCGATGGAGGGACTGCAGCTGGGAACAGGCACTCTCTGCGCAATATGAAGAGCTATGAGCTTTCGCTTCAAGATGCCTCAGAGGAAATGGGTTTAAggcttttaaaactgtaaatgtgaaGGCTATGGTgtgatttattgcatttttaacgTATTATTTACAAACTCCCTGAGGATGGCCGGGGGTCTTCTTTCAGAATGGAGTCTGTACATGGTGGGCGATCTGCGTGGGGGAGGCCGGGGAATTGGTGGAGTTATTGGCGATGCGCGCCGAGTCCGAGAGCTGCAGCTCCTCCAGTTTCTTGAGGTACTGATCCCGCAGGGCCAGGAGCTCTCGGTAGCGCTGCTCCACCGGGTTCTGCTGCTGTGGAGGGCAAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105099 lncRNA upstream 179923 8375331 ~ 8376038 (+) True G84244
TU105048 lncRNA upstream 348583 8201838 ~ 8207378 (+) True G84196
TU105006 lncRNA upstream 512792 8040224 ~ 8043169 (+) False AMCG00021180
TU104988 lncRNA upstream 576135 7978217 ~ 7979826 (+) True G84155
TU104910 lncRNA upstream 855278 7657193 ~ 7700683 (+) True G84095
TU105163 lncRNA downstream 29180 8587598 ~ 8588963 (+) True G84298
TU105326 lncRNA downstream 861638 9420056 ~ 9423419 (+) False G84425
TU105395 lncRNA downstream 1306268 9864686 ~ 9878867 (+) False G84477
TU105397 lncRNA downstream 1306268 9864686 ~ 9868508 (+) True G84477
TU105424 lncRNA downstream 1447693 10006111 ~ 10009690 (+) True G84495
AMCG00021189 mRNA upstream 801 8549054 ~ 8555160 (+) True AMCG00021189
AMCG00021190 mRNA upstream 15312 8502496 ~ 8540649 (+) True AMCG00021190
AMCG00021186 mRNA upstream 221202 8331313 ~ 8334759 (+) True AMCG00021186
AMCG00021187 mRNA upstream 242536 8300022 ~ 8313425 (+) True AMCG00021187
AMCG00021185 mRNA upstream 272669 8276056 ~ 8283292 (+) True AMCG00021185
AMCG00021194 mRNA downstream 207883 8766301 ~ 8778421 (+) True AMCG00021194
AMCG00021195 mRNA downstream 222133 8780551 ~ 8801816 (+) True AMCG00021195
AMCG00021200 mRNA downstream 277794 8836212 ~ 8842182 (+) True AMCG00021200
AMCG00021199 mRNA downstream 293907 8852325 ~ 8855863 (+) True AMCG00021199
AMCG00021196 mRNA downstream 378560 8936978 ~ 8939942 (+) True AMCG00021196
TU104813 other upstream 1434724 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 1434724 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 4322205 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 4426745 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 4757178 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 73309 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 857849 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 2404730 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 3516927 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 7505182 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile