RNA id: TU105163


Basic Information

Item Value
RNA id TU105163
length 1366
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G84298
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8587598 ~ 8588963 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agacagaaaaacaaaacaaaaacaaaaaacaacaatattgcAAACTGTAATGGCTTATAGTCATCTCCACAATAACAGAACCCACAAAATAGGGTGCCCACAGTCTGAGTATTTAGAACAAAAGAAATGAGTGCTTTTCTTGCAACCAGGCTGCAACAGTGCGTTCCAGATCCAGAAGGGACACAAAAGgaccccccaacccccatacacacacaccaccccccAACACCACACATTTAACAAGCAGAAGATGACGAGACTGCAGAACACTTAGATTCAGGACTTTCTCTAACACTTCAACCAACTAGAAGCTGATACACTTTCCATAATGAGAGAAGACTCATGGAAAAGCGACAACCCTGCCTGGCCATTTTATTAGGAGGATGTGGGTCTCATACTGGTTGTGGCTCAAGGTAAGAAGCAAAGGTGAACTGCTCTGTTTTTGCTATTGATATTCCTGCTGACAGACAGGCTTCTCAATCAAACTTGAGATCTGCCATACAGAGTTTCTGTAGCTACAGCTTGGTCTGCCATGGCAGGATATCATCCTCTCAAGAGCAGCTCTGGCTTCCCAGTCTCCTGCTATATAGGCCTACTAACAACACCCTTGAAAACACCCAGCATTTTAAATTGAGGCCACTCTTATACGATGCTAAACAAAAGTGCAATTCAAACACATGATCAATCCGGTCCTTTAAAGTGGGCAAGGagcatctgtttttgtttgttttattcctcgaaaaataccaaaaataaatatataaataaaaaaatacagtagacAAAACACTTTGTCTGAAACAACTTATTGGGTAGTAGAAATGTCTGTCGACCAAACTGAAATCGTTTCAGAGCAGGGAAGTGACGGGGCTGTTTGAAAGGACTTGTAGAACTATCGGCATAACCATCGGAACTAAGGCCGAGAAACTGCCGAGCTGTGCAGTATCTGCTTACACTCACAGCAGTTCAGCTGAGGAGCAGCTGGGTTGTTACGTACCGAGAGAACTCAGTCTGCTCATAGAGAGGCCAGTCAGGGTTGAGTGGCCCTTATTGGTTGGAAGAAAAGTCTGCTTCTGAGGTATTATGCAGCAGAGATAAGGCAGTTCAGAGTACTGTAAATAAAGGGAGACAATTTACTTGATAAATCCTACAAAAAAAGAGTATGcctaaacatgaaaataataaggagatcaaaaaacaaacagaagtatGTTGGGGAGAAACAGAGGGGGTGGCGGCGGCACCAGGGTTTCAATTGTAGACAGCTTTTCCAGAATCTTCCACCCGTTCCATTACTCAAGCCTTTCAGCAGCGACCAGAGCACGTGTTATgtcaaaaacataacaaatatataaacattgtaaTA

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105139 lncRNA upstream 29180 8555961 ~ 8558418 (+) True G84276
TU105099 lncRNA upstream 211560 8375331 ~ 8376038 (+) True G84244
TU105048 lncRNA upstream 380220 8201838 ~ 8207378 (+) True G84196
TU105006 lncRNA upstream 544429 8040224 ~ 8043169 (+) False AMCG00021180
TU104988 lncRNA upstream 607772 7978217 ~ 7979826 (+) True G84155
TU105326 lncRNA downstream 831093 9420056 ~ 9423419 (+) False G84425
TU105395 lncRNA downstream 1275723 9864686 ~ 9878867 (+) False G84477
TU105397 lncRNA downstream 1275723 9864686 ~ 9868508 (+) True G84477
TU105424 lncRNA downstream 1417148 10006111 ~ 10009690 (+) True G84495
TU105471 lncRNA downstream 1636120 10225083 ~ 10225298 (+) True G84535
AMCG00021189 mRNA upstream 32438 8549054 ~ 8555160 (+) True AMCG00021189
AMCG00021190 mRNA upstream 46949 8502496 ~ 8540649 (+) True AMCG00021190
AMCG00021186 mRNA upstream 252839 8331313 ~ 8334759 (+) True AMCG00021186
AMCG00021187 mRNA upstream 274173 8300022 ~ 8313425 (+) True AMCG00021187
AMCG00021185 mRNA upstream 304306 8276056 ~ 8283292 (+) True AMCG00021185
AMCG00021194 mRNA downstream 177338 8766301 ~ 8778421 (+) True AMCG00021194
AMCG00021195 mRNA downstream 191588 8780551 ~ 8801816 (+) True AMCG00021195
AMCG00021200 mRNA downstream 247249 8836212 ~ 8842182 (+) True AMCG00021200
AMCG00021199 mRNA downstream 263362 8852325 ~ 8855863 (+) True AMCG00021199
AMCG00021196 mRNA downstream 348015 8936978 ~ 8939942 (+) True AMCG00021196
TU104813 other upstream 1466361 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 1466361 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 4353842 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 4458382 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 4788815 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 42764 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 827304 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 2374185 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 3486382 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 7474637 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile