RNA id: TU105166


Basic Information

Item Value
RNA id TU105166
length 1684
RNA type TUCP
GC content 0.59
exon number 1
gene id G84301
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8631727 ~ 8633410 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCTGTTGAGTGGCATCAGGCCTCCTGGCTGCAGGGCCCTTGGCATGCGTTGCTGtagctgttgctgctgctgttggatCAGTTGAGAGTGGCTGGCCGAGGGAGGCTGTGGCATTCCCGAGCTCGACTGCGGTGGCATGTAGTGAGTCAGAGAAGGCTGTCCTGGCCCACCAGGAATGGATGCCACCTTCTGAGCTGGGGGCGGGTCGGGGTCGAAGTGGCTGAGTGGCTTGGTGTTGTTGAAGGAGAAAGGGTCCTGGCCCAAGCCGCCCTTATTCATTAGGCCTTGCTGCATGGCgctgggtggtgggggggctgcTTGCTGTGCcggttgctgctgttgctgtggcGGCTGCTGCTGGGGCTGTGGAGCTGGTTGgctttgttgttgctgctgctgctgctgttgcatcAGCATGTTGAGGCTGGGCTGGCTGGAGGTCATGGCTTTAAACAACTGGCTGGTCATAGCACTCCCTGACCCGTTCTGAGGGCTGTAGGTGTGCTGCTGAACAGCCGGGCTGGAGAGCTTGTCCGGCCTGTAGGGTGGGGAAGGCCTGGTGCCTGAAGAGGGCATGTTGGGCATTAAGTTGGCTTGGGTGCTCTGCCCCCCTGTGGGAGCCATGTTGGGCAACAAGGAATTCTGTGGGCTGAATGGAGGCTGTGCCAGGGCTGGGCTTGCCAGCTTCTCGGGTCTGTAGGGAGGAGAAGGCCCAGTGGACGGGGCAGGAGCCATGCTGGAGATCATGGCGTTCTTGGGGCTCTGGATGCTGGTGGCAGGGCTAAACGGCTGCTGGTGCGGTGAGGAACTTGGAAGCTTTTCAGCACGGTATGGGGGAGATGGACCGGAAGATGGCATTGTCGGCCAGGAAGAGGCTTGGGCAGGTGGCGGCTGTGGTGGAGTGGAGATGTGTTTGCTGTTGGCCATCTGTTGCAGCTGCTGGGCCCGTGACACCTCATGCCAGTTTGTGCCCGAACGGTTCGACAGGGCAGCAGACAGCATGGGTGACCGCGCTTGCGTTTGACTTTGGCTGTTGGAGGACATGGGTGAGGGAACAGCCTTGGTAGGGTGTGGCAGGGAGTATGGAGCCCCAGCTGAAGGAGGTCCAACTTGTGGTGACCCCACCGGAGCTTGGCTGAAGCCTGGGGAGAAGTCCTTGTTGGTCAGGTGACTCTCCAAGTGCGAGGTCCTCGGAGGAGAGCGTTTAGGAGTGCCGTTAGTGTCAGGATGCATGAAGCCCACACTCACTTGCTCATCGCTCTTGTTCCCCAAGATCTTTTCGATATCCAACTCATTGAGAGAGGGATCAGGGTTTTTCGTGAGCTCATCGAGAATGTCTTGCAGCTCCTGCTCCACAGAGGGAGCGTTGCTGTTGCCATTGGGGTCAAAAGAAGGTAGCATGCCCCCATGTCCTGCTGTGCCAGGGCTGGGCTTGATCTCAGAGAAAGGGGAGCCCATACCATTACCATTCATCTGATTGCCATCCAGAAGCCCAGAGTGGCCTCCCACCCCAGTGCTTGAGGAGTAGGGTGAATTCTGGGACATGCTGGGCCCAGAGCCAGGTCCCATAGACAGGGTCACATCTTCCAGGCAGGGTCTCTTGCTGCTACCAGGGATCATCCCATCAGACACGCCGTTAACTACAGGTGAGCTATCATCCGCCAACTTCCTCTTTACCGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105163 lncRNA upstream 42764 8587598 ~ 8588963 (+) True G84298
TU105139 lncRNA upstream 73309 8555961 ~ 8558418 (+) True G84276
TU105099 lncRNA upstream 255689 8375331 ~ 8376038 (+) True G84244
TU105048 lncRNA upstream 424349 8201838 ~ 8207378 (+) True G84196
TU105006 lncRNA upstream 588558 8040224 ~ 8043169 (+) False AMCG00021180
TU105326 lncRNA downstream 786646 9420056 ~ 9423419 (+) False G84425
TU105395 lncRNA downstream 1231276 9864686 ~ 9878867 (+) False G84477
TU105397 lncRNA downstream 1231276 9864686 ~ 9868508 (+) True G84477
TU105424 lncRNA downstream 1372701 10006111 ~ 10009690 (+) True G84495
TU105471 lncRNA downstream 1591673 10225083 ~ 10225298 (+) True G84535
AMCG00021189 mRNA upstream 76567 8549054 ~ 8555160 (+) True AMCG00021189
AMCG00021190 mRNA upstream 91078 8502496 ~ 8540649 (+) True AMCG00021190
AMCG00021186 mRNA upstream 296968 8331313 ~ 8334759 (+) True AMCG00021186
AMCG00021187 mRNA upstream 318302 8300022 ~ 8313425 (+) True AMCG00021187
AMCG00021185 mRNA upstream 348435 8276056 ~ 8283292 (+) True AMCG00021185
AMCG00021194 mRNA downstream 132891 8766301 ~ 8778421 (+) True AMCG00021194
AMCG00021195 mRNA downstream 147141 8780551 ~ 8801816 (+) True AMCG00021195
AMCG00021200 mRNA downstream 202802 8836212 ~ 8842182 (+) True AMCG00021200
AMCG00021199 mRNA downstream 218915 8852325 ~ 8855863 (+) True AMCG00021199
AMCG00021196 mRNA downstream 303568 8936978 ~ 8939942 (+) True AMCG00021196
TU104813 other upstream 1510490 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 1510490 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 4397971 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 4502511 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 4832944 3797841 ~ 3798783 (+) True G83624
TU105325 other downstream 782857 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 2329738 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 3441935 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 7430190 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 7956771 16590181 ~ 16592973 (+) True G85764

Expression Profile