RNA id: TU105171


Basic Information

Item Value
RNA id TU105171
length 1269
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G84305
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8589220 ~ 8590488 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGACCTTCCTTGATTTATCCAGGAATGTCTGAAAAACctctattaaaaataacatttttaattgaagtttcAATCTGAACTTCTGTAGTTATCTAAAAAACTGCctaatatttctttttttttcgtAACATGTGGTGTGACTGTCCTTCGGTAGAAAGCCTAGACTTATGTCTGCGTAGCAACAATGAATCTAGCCGGGCACCAGTTGTTCTGGTACAGGCTGCCTGGCattgtttaatcaaaacagACTGCTCTGGGCCTCCCTCCAAATAAGCCCTTTATccaaataacacacacacacttgcacacacacttCTAGTAAATAGGAATCATCTTGTTGTAAAGCGTTTGcattaaagaaaggaaagacCAATGAAGTGTAGCTGTTTATACACTAAAGAAAGCCTATATGTTACTCGGTTTGTTTAGTCTTGGACTGCTACACCCTACAGTCTAAGAGAGTGTAGCCAGCACCGTTTAACACACAGGAAAATGGGAACTAAGAGTGCAATCTGAGATGGGCTATTTTTGGTTATGAGGATAAGCATTTAATAACTAGTAGAGGTGCTTGTAAAGAAAGATGGTGATGAAATATATTCGACTGTAACTCATTGCAGCCCCTATCTTTGTCAAGACGGGGTGAAGGTTTGAAGTCCACACTTCAAGATGGCACACCTTTTCTTATGGTTTAGAAATTTCTTAACAATTTTTCAGTATGATAGAAATCTGTAGTCAGTAAGAGATGCCATCTATGGGAATACAATTCATATTTGGTGATCATTTGGTGGTTACCGTTGGCAgttaacagaaaaacacacaaaaaacccaAACCCTGTCCTGTTTATTTAAGACTTTCCTCAAACTTTTTCCTTTTAGGCTGGTCATAGATCCAGTTGGCTCTTTAGACAtgttgattattaatattaaatagcaTATTCATAAtggttgaaaaaaaataattgtccCACATCAGGAAATTAACCCAGAATGCACTTTTCCTCCTCCCTGtggtttcaaattaatatatccTTTTACATTAAGTAATTGACACCCCTGAGGTAATGGACATGTTGAGTGGTGAAAGGGttaaagttgtttgttttggtgttgcGTATTTACAGTGGCTTCTGGCTCGGTTCTCTGACGTTCgaccactgttttatttgtgGCAAGGTTCTTTCACGGTTGGCAGAAATTCGTTGGAGGGAACATGCGCTGTCATGGTgaacgctttttttttttcctgtggggGATTTTACAGGGGATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105170 lncRNA downstream 167 8587569 ~ 8589053 (-) True G84304
TU105055 lncRNA downstream 381670 8201759 ~ 8207550 (-) True G84203
TU105033 lncRNA downstream 472393 8064531 ~ 8116827 (-) False G84184
TU105173 lncRNA upstream 111091 8701579 ~ 8701918 (-) True G84307
TU105177 lncRNA upstream 150673 8741161 ~ 8741413 (-) True G84311
TU105216 lncRNA upstream 245787 8836275 ~ 8840659 (-) False G84332
TU105215 lncRNA upstream 245820 8836308 ~ 8840659 (-) True G84332
TU105217 lncRNA upstream 245820 8836308 ~ 8840659 (-) False G84332
AMCG00021209 mRNA downstream 9205 8558232 ~ 8580015 (-) True AMCG00021209
AMCG00021191 mRNA downstream 40602 8541641 ~ 8548618 (-) True AMCG00021191
AMCG00021193 mRNA downstream 73298 8379989 ~ 8515922 (-) True AMCG00021193
AMCG00021192 mRNA downstream 216478 8361931 ~ 8372742 (-) True AMCG00021192
AMCG00021188 mRNA downstream 313590 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021208 mRNA upstream 536 8591024 ~ 8603676 (-) True AMCG00021208
AMCG00021202 mRNA upstream 41184 8631672 ~ 8636891 (-) True AMCG00021202
AMCG00021201 mRNA upstream 171215 8761703 ~ 8763622 (-) True AMCG00021201
AMCG00021204 mRNA upstream 178845 8769333 ~ 8774394 (-) True AMCG00021204
AMCG00021203 mRNA upstream 211774 8802262 ~ 8818843 (-) True AMCG00021203
TU104623 other downstream 2042643 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3837985 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5907458 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 6129841 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 6611252 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 3936605 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4129376 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5036847 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5279451 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 5459486 14049974 ~ 14051897 (-) True G85115

Expression Profile