RNA id: TU105173


Basic Information

Item Value
RNA id TU105173
length 340
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G84307
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8701579 ~ 8701918 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acgtgagcatcagaactggaccacagagcaatggaagaaggtggcctggtctgatgaatcacgagttcaaggtgttgacttggcctccaaattccccagctctcaatccaatcgagcatctgtgggatgtgctggacaaacaagtccgatccatggaggccccacctcgcaacttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgccttgacgggtcaaggctgttttggcggcaaaagggggacctacacaatattaggcaggtggtcataatgttatggctgatcggtg

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105171 lncRNA downstream 111091 8589220 ~ 8590488 (-) True G84305
TU105170 lncRNA downstream 112526 8587569 ~ 8589053 (-) True G84304
TU105055 lncRNA downstream 494029 8201759 ~ 8207550 (-) True G84203
TU105031 lncRNA downstream 584752 8109651 ~ 8116827 (-) True G84184
TU105035 lncRNA downstream 584752 8109651 ~ 8116827 (-) False G84184
TU105177 lncRNA upstream 39243 8741161 ~ 8741413 (-) True G84311
TU105216 lncRNA upstream 134357 8836275 ~ 8840659 (-) False G84332
TU105215 lncRNA upstream 134390 8836308 ~ 8840659 (-) True G84332
TU105217 lncRNA upstream 134390 8836308 ~ 8840659 (-) False G84332
TU105443 lncRNA upstream 1385786 10087704 ~ 10090475 (-) True G84514
AMCG00021202 mRNA downstream 64688 8631672 ~ 8636891 (-) True AMCG00021202
AMCG00021208 mRNA downstream 97903 8591024 ~ 8603676 (-) True AMCG00021208
AMCG00021209 mRNA downstream 121564 8558232 ~ 8580015 (-) True AMCG00021209
AMCG00021191 mRNA downstream 152961 8541641 ~ 8548618 (-) True AMCG00021191
AMCG00021193 mRNA downstream 185657 8379989 ~ 8515922 (-) True AMCG00021193
AMCG00021201 mRNA upstream 59785 8761703 ~ 8763622 (-) True AMCG00021201
AMCG00021204 mRNA upstream 67415 8769333 ~ 8774394 (-) True AMCG00021204
AMCG00021203 mRNA upstream 100344 8802262 ~ 8818843 (-) True AMCG00021203
AMCG00021205 mRNA upstream 280578 8982496 ~ 8999604 (-) True AMCG00021205
AMCG00021206 mRNA upstream 366100 9068018 ~ 9074386 (-) True AMCG00021206
TU104623 other downstream 2155002 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3950344 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 6019817 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 6242200 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 6723611 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 3825175 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4017946 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 4925417 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5168021 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 5348056 14049974 ~ 14051897 (-) True G85115

Expression Profile