RNA id: TU105487


Basic Information

Item Value
RNA id TU105487
length 3709
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G84549
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10279988 ~ 10361508 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AcagcttttatttgtttgtaacaAATGTAGGATCTTGATTTAGGAAGGCAATAGGAAGCTTTCCTGAACAGAatgatcacattttaaataaactgcctgACTTTcaataaagcatatatataaaaagaagcTTTGTAGGTTTTgctgaaaacaagaaacagatACTATACATACCACCTTCACAAATGAGAAGTGTTGACATAcatacaaaaggaaaatgttatatatttttatgacagACAAAAggtaataaacattattttgagtTAAGAGATACAGGACATGCTTTAAAAGTGACATTACTGAGGTTCTAATAAGGCTGACATCTTCGGTAAAAGTCCAGTGCAGTAACACAATGCTTGTTGGTTTTGAGGAATAGTTGGAGTCACCCTCAGTATGACCCTATAACAGGAGTTGGAACCCTTAGCAGTCCACCCACCCATCTACCACAGCAGTAATCttactcatttttattttaaattaaaataaataaggaatatgCTACTTAAAATAAGGTTTCACCCTGGTTGAGGACAATAGTTATGCACTGTAGTGTGCTTTCACAGTCTCTATCCTTTTGTATTCCATTAACTATGTTCACTTGTACATTCATACAAGGTCAAATCATCAATGTGACTGACTTTTCTggcattaattttattttgtatataaaaggttttagacattgtaatttaagataaaattaaacatttattaggGGACTTTAATTACGGTTATCACAAGAACTGTTAACTTTAGCACCAACGCAAGCATGAACCCTATGTTCTAATCTGGGCATTACAACAAAATCAAGATCGTTAGATAGTGGTAGTTTTTCGGCATTCTCGATGACGTAAAGCAGAtgtacactgaaacacagagactGAATTACAGGTATGTAGAGTAACACACAGTTTTTAGATATCTTCAGAACATATTCTTATAGAATACTGGAGTACAAATGTTATTTAGTGATAGAGAAAtcccccaaaaaaacatttaatcttgaggaaaatgaagcagaaaacaaatgtggtaCAGTACAATTAGTCCAAGTACagtaatacagacacactgtcacaaaataaacaaggtaataaaataaagtgtttgttGGAGGGAGGGGCATACTTGAACACCAGGTAAATTACTTTACAAgcatcaaaacaaatacaccatATAAAGTCCAGTataaataacagttttaaaactGAGTAAATATGGAGTTAGATATCCATGTGTAAAGCAGTTGTAAGTGGTTTGGTATATTTTATGCTACCTTTtagcttaattaaaacattaattcaagCCATCAATGATTAGTGACCCTGTAGTTTTGACTAAAAACCccactgacttttttttttaattattaacccCCCTCCCAATCAGTCTCTTCCAGACAGCCATGAAGATTGACAAAAGCCTACTCTTCTGAAGTGGCAGAGATAACATAAGACTATGTTAGTCAGCAGCTACAATACAGCTACTGTGTAATACAATTATCCTTTACTTGTTATAAATTACTGTTAAAACAACACCATCATCATTATTGTGGATGCCATGAGTACACAAGTAAACATTAAACTCTACAAGTATATCACGTACAAACGCCAGAGCTAGTACCTCATGAATGAGAAGAGTAATCCACTCAAATATTTTAACTGGTATATAACTAATTTtgcatgtaaaaatgtaattctgtttaTCAGGCAATGCCTACTGTAACCCCTAAACATCTTGTTTTATCAGATATATAgttaagtgatttaaaaaatatattaaaaatatatcaatattataacAGCTGTATTTAATCCTAATTTGGAAAAGCATTTCACTATTGAAAGTGACTCATACCATTCATTGGAATCATTGGAAAGTCTAGACAAATTTCTCTGCCCACAGATACACGGCAAGGTTAGTAAATCACCATAAAGCAAAGTCCCAACTGCATGAATTCCCTGTCTCTTCACATAGTAAACTGCTAGTGAGGATGCGTGATATATGATGCACGCTGAGTggaaaataagattttttttttttttttttttcatttttagtttttattttaaggtgttTCTGTCTCCATTCAAACTGAGCATGCTTAACAAGTTATTGCTGCCAACACAAGGTTAAACAGGTAACCCtgtccagaaaaataaaataaaaataaaggaaaacaaagaaaaaattatTTTACCACCTTGCGGCAACAAAGTTGAAGTCTGGCAAGTGCAATAACCACAgtataaatacaagaaaaacaccCTTTTGGTCACTTTATTAATTGTGATATTAAATACTTATCTAGTAAATAGCAGATTAATGGCAAACACAATGAGGTGTATTTCTAGCATGAAAACATtcttgggaaagaaaaaaagtccctgtacatttctaaaatacaCCTTGTGCAATTGAAGGAGCTTATGTCTCCATTAAGAATGACATTTCCAAGAAATCTTATTGTCATCACAGCTACGCAGTTTCAGCATTTGAAGCTAGATGTGTCAAAATATAACTACACAAGTGGGACGAAAACATGACCAGTACCACAGTACTATGCTAAATAACACTTTACAACAACTCAGAGGTTACAAAAGTTCAGAGATTTAGCAAGCAgttgaaacacaacacagacagttatttgttttgattagcAACAACTAGTATAACCACCTCTAcgcaatttacaaaaaaaatctcagtcaacaattattcataattttgtattattttatgtatacgAACTAGATATAAGGCCGTAACTTTTTCTGGTATatatttcttctccttttttggTGTTGATACAATTGCCTCCTGGagactttgtttttaaaaatgcatcagtcaccgtaaaacacaaattaaaaattggGAATAAGGAATCTATTCGGGAAAGAAGACTTTTGCCAGCCACAACTTTTCAAGGCAGCAGGTGCTTTATTCCATAAAAAATTGTAACAAGCAAAACTATGGTCCCAGTAATATGTTCCGCAGTAAGATACGAGTTATACTTACACTTTTCAAAACATACTTTTTGGTGGGGAAATTTAAACATAGAATTAAATTAACCAAATTGGGACCaggggaacaaaaataaaaaatctatcaAACCATATACTCTTTAAAAGCACTTTTCCCCCCCATAATGTATTGAAAAGAACTGAAAATGGGATAACTTGAATGACATTATTAAGGCTATATATACAGTTGCGAACAGAATTGCAAGATCCCTTCAGTCATTGCATACATCTCTCAGGGGAGCCGTTCTTTAGATGGAGTGGTGCATCAATCTGATGAAGAAAGCAGCCTATTGGTGATCCACTAAGCACTGTGGACTTCCATGTAACCGATGATTTGTAGTTCTGCCAACTCTGCAAATGCCTGCATTCTCTAATTTCCTTGTGATGGTCCTGGGTTTTTGTTCCTCATCTGGGATGTTGGGGAAGGGACCCTCTGCAGAGTTTGAGGCTGCAGGGCGCTGTTAAGCTGCTGGTATAAGTTGAGCAGGTCCAGCTGGCTGAAGGCATGGGTGTTCAAGACTCCTTTCTGCATGGCCATTTGGTTTAAAAGGTTGGCCCTGTTTGCCAATGCCATTTGCTGCTCGTGAGCTTTTCGGTTGGTCAGCACCTTCTGGACATACATGATCAGCTGTGGAAAAAGCAGAGCGATGTCACTGGCATGGACATTGGTAGAAATCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105473 lncRNA upstream 17535 10227905 ~ 10262453 (+) True G84536
TU105471 lncRNA upstream 54690 10225083 ~ 10225298 (+) True G84535
TU105424 lncRNA upstream 270298 10006111 ~ 10009690 (+) True G84495
TU105395 lncRNA upstream 401121 9864686 ~ 9878867 (+) False G84477
TU105397 lncRNA upstream 411480 9864686 ~ 9868508 (+) True G84477
TU105577 lncRNA downstream 273888 10635396 ~ 10636269 (+) True G84627
TU105578 lncRNA downstream 329233 10690741 ~ 10690964 (+) False AMCG00021240
TU105619 lncRNA downstream 675073 11036581 ~ 11036826 (+) True G84662
TU105622 lncRNA downstream 777769 11139277 ~ 11139491 (+) True G84665
TU105623 lncRNA downstream 789668 11151176 ~ 11151438 (+) True G84666
AMCG00021233 mRNA upstream 837 10274489 ~ 10279151 (+) True AMCG00021233
AMCG00021227 mRNA upstream 201213 10067228 ~ 10078775 (+) True AMCG00021227
AMCG00021229 mRNA upstream 235268 10044181 ~ 10044720 (+) True AMCG00021229
AMCG00021224 mRNA upstream 250405 10016520 ~ 10029583 (+) True AMCG00021224
AMCG00021225 mRNA upstream 275986 9975043 ~ 10004002 (+) True AMCG00021225
AMCG00021235 mRNA downstream 20922 10382430 ~ 10422404 (+) True AMCG00021235
AMCG00021240 mRNA downstream 108555 10470063 ~ 10719327 (+) True AMCG00021240
AMCG00021247 mRNA downstream 632276 10993784 ~ 11530471 (+) True AMCG00021247
AMCG00021245 mRNA downstream 1430730 11792238 ~ 11819570 (+) True AMCG00021245
AMCG00021244 mRNA downstream 1483001 11844509 ~ 11847471 (+) True AMCG00021244
TU105325 other upstream 856569 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 1646578 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 3158751 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 3158751 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 6046232 4230972 ~ 4233756 (+) False AMCG00021114
TU105614 other downstream 601640 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 1713837 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 5702092 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 6228673 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 6295136 16656644 ~ 16661882 (+) True G85787

Expression Profile