RNA id: TU105969



Basic Information


Item Value
RNA id TU105969
length 354
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G84936
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13600205 ~ 13601928 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CGTTGAAAGGCGTGGTTTGCATGTGCATTTAAAGTTAGGTACGTGCCAACAGGTGTCTTATATTGTACAGAAACAGCACCTGGCAAGACTCGGCCTACCAGAATGGGCAACTGGATTGTAAACCATGGCTTATCGGCTCTTATACTGGTTGTGTGGATGGCAATTAATATATTCCTGTTTTTATACTTCTACTTTTTGTACGACTTGGGAGATGAGTATATCTACACCCGCCATCTTATTGGGTCTGCCTTGTCATGGGCACGCGCACCTGCTGCTGTCCTCAACTTTAACTGCCTGCTGATCCTGCTCCCAGTGTGCAGGAACTTGCTGTCTCTAGTCCGAGGATCCTTCATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105947 lncRNA upstream 27758 13571771 ~ 13572447 (+) True G84923
TU105892 lncRNA upstream 162797 13435307 ~ 13437408 (+) True AMCG00021267
TU105833 lncRNA upstream 538442 13056182 ~ 13061763 (+) True G84837
TU105821 lncRNA upstream 760996 12800829 ~ 12839209 (+) True G84825
TU105794 lncRNA upstream 1261998 12337997 ~ 12338207 (+) True G84803
TU105971 lncRNA downstream 1930 13603858 ~ 13604159 (+) True G84938
TU106002 lncRNA downstream 79009 13680937 ~ 13685245 (+) True G84962
TU106054 lncRNA downstream 259742 13861670 ~ 13862498 (+) True G85006
TU106064 lncRNA downstream 267634 13869562 ~ 13917871 (+) True G85013
TU106071 lncRNA downstream 294991 13896919 ~ 13899981 (+) True G85019
AMCG00021277 mRNA upstream 1190 13586894 ~ 13599015 (+) True AMCG00021277
AMCG00021266 mRNA upstream 145353 13448596 ~ 13454852 (+) True AMCG00021266
AMCG00021263 mRNA upstream 152687 13442785 ~ 13447518 (+) True AMCG00021263
AMCG00021267 mRNA upstream 163822 13435459 ~ 13436383 (+) False AMCG00021267
AMCG00021265 mRNA upstream 166676 13419812 ~ 13433529 (+) True AMCG00021265
AMCG00021276 mRNA downstream 20921 13622849 ~ 13630470 (+) True AMCG00021276
AMCG00021275 mRNA downstream 48335 13650263 ~ 13662469 (+) True AMCG00021275
AMCG00021279 mRNA downstream 91440 13693368 ~ 13704090 (+) True AMCG00021279
AMCG00021280 mRNA downstream 129768 13731696 ~ 13752149 (+) True AMCG00021280
AMCG00021281 mRNA downstream 246304 13848232 ~ 13850457 (+) True AMCG00021281
TU105723 other upstream 1499498 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 2613031 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4176786 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 4966795 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6478968 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2461672 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2988253 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 3054716 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 3054716 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 3395949 16997877 ~ 17004131 (+) True G85869

Expression Profile