RNA id: TU106002


Basic Information

Item Value
RNA id TU106002
length 1783
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G84962
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13680937 ~ 13685245 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGggttagtttaatttattttgtttcaagtATTTTCTTCAAAAGCGGATTCTGCAAACAAATGTCAGACAGCCTTtaacactacattaaaaaatacaaaaaatatactatATCTATTGCACTGAATGCAGACTACAGGTATCTGACAGCAGAAACTTTAAAACATTGGCTTCAAAAGTATGCCTCCTAGCACAAATTATATGTTGCCTTGGTAAGATTTCTCATGGATAATGTTagttaaaaatctaaatatctAAAGATTAACAAAgcaaggaagaaaaacagaacaaacatgcAGGGTGATTGAACTAGACTTGCACAAGCCAATATGTGACATGTAAatattgttgtatatttattcttttttaatctaAACACTAGTGCTACTATTTTCACAGACTGTCAAATAACCAAAGCTGCACAAGAATTCAGCAAATCTGCATTATAAACCTAAaggaaaaaatactaaatactgaaactgaccaacattttaaagacactaacattcaacactttttttttccccaccaaaGAAAATACAAGTACAAAAACTACCCATCCTAATTGAATCCAGCAGGACTTTTCTTCTTCCAAAAGCTGCACCAAATCTTAAATCTAATTGAACATTTCAGACTATAATGTTTTTACACACAAGAATGCAcatctatattttaaatgccaaCATCCAAAATAGTCCCTTTACTTTTCTGTGAGGAAATGCCAATGCAACAAGCAGGAATAATTTGGTCACAAAGCATAAGGCAATAGCAATCATGGATACAAACATTCAAAGCAATTTGCAGTCTTACTTTTTATTCCTACATCTATAAAATGAATTCTACAAGTACATAACAaaactgttgtattttgtattctaaaCAGATACATCTGTCACAGCATGTGCAGAGGGATATGGGCAATTTGACATAAATAGCTATACTGCATGATAATTGGTCTATTACCTGGTTAGATAGTAATTACTTGTGTCCCTTAGCTTATCATGAGAAAATAGTTCAGCTCGTTAACACTTTTCCAAAAGGCAAAAGTACTAGAATATTAGTACAGAACAACCCTGTTGAAGACCTGTGATACAAATGAActacaacatttaattttagtgGAGTTTTAAGAGGAATTCTTAAGGCCACTTTATATGACACAGAATGCACAGATTTAGTATTGACTCTCTCTACCGTACATCAGAAGAGAATAAGCAATGCCGTTTGGTATTTTGTTACAAAACACTCGGTTTGATTTCTAAAGAGTCAGGAAGGCTGTAATGAGCTGCAGTATGAATTCTACGAGCAAGAAAAACGAACTGAAACGGCAAATGGAATAATCACACTATTTCAACTGGCATGCTACTGAAAGGGTTTAAACCCTTGTGTGAACATATGTTTAAAGAAAACTTTGCTGCTTGCAGTGTTTGGCACGTTCTTCACAATACACCCAGTTTATAAATATCAAAAGCATTTGAGTAGTGGTGTAACCTGATCCTGatccttttaattttttatttttttttcccccatttggCAATGAACTTATTTATTCCTTCTTTCCCTCAATTCTGGTAGCCAGAAAGAGTTATAAAAAGTctttaaaggaagaaaaaaaaactaactaaaaaaaaaaaaacatccaattaaaaaagcagatcCATCTTCCCTTTGAGTTGGCTTTCTGCAGGCACACGTCTGTATCCTGAGAGTTTGCGGCTACACCATCTCGTACTGGTTGTTGGTGATGTACCGTGACAGGCAGCAGGCCAAGAAGATTCCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105971 lncRNA upstream 76778 13603858 ~ 13604159 (+) True G84938
TU105969 lncRNA upstream 79009 13600205 ~ 13601928 (+) True G84936
TU105947 lncRNA upstream 108490 13571771 ~ 13572447 (+) True G84923
TU105892 lncRNA upstream 243529 13435307 ~ 13437408 (+) True AMCG00021267
TU105833 lncRNA upstream 619174 13056182 ~ 13061763 (+) True G84837
TU106054 lncRNA downstream 176425 13861670 ~ 13862498 (+) True G85006
TU106064 lncRNA downstream 184317 13869562 ~ 13917871 (+) True G85013
TU106071 lncRNA downstream 211674 13896919 ~ 13899981 (+) True G85019
TU106122 lncRNA downstream 277864 13963109 ~ 13964224 (+) True G85056
TU106138 lncRNA downstream 315351 14000596 ~ 14002419 (+) True G85069
AMCG00021275 mRNA upstream 18468 13650263 ~ 13662469 (+) True AMCG00021275
AMCG00021276 mRNA upstream 50467 13622849 ~ 13630470 (+) True AMCG00021276
AMCG00021277 mRNA upstream 81922 13586894 ~ 13599015 (+) True AMCG00021277
AMCG00021266 mRNA upstream 226085 13448596 ~ 13454852 (+) True AMCG00021266
AMCG00021263 mRNA upstream 233419 13442785 ~ 13447518 (+) True AMCG00021263
AMCG00021279 mRNA downstream 8123 13693368 ~ 13704090 (+) True AMCG00021279
AMCG00021280 mRNA downstream 46451 13731696 ~ 13752149 (+) True AMCG00021280
AMCG00021281 mRNA downstream 162987 13848232 ~ 13850457 (+) True AMCG00021281
AMCG00021282 mRNA downstream 256742 13941987 ~ 13947771 (+) True AMCG00021282
AMCG00021283 mRNA downstream 263237 13948482 ~ 13982728 (+) True AMCG00021283
TU105723 other upstream 1580230 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 2693763 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4257518 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5047527 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6559700 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2378355 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2904936 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2971399 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2971399 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 3312632 16997877 ~ 17004131 (+) True G85869

Expression Profile