RNA id: TU106048


Basic Information

Item Value
RNA id TU106048
length 3523
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G85003
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13751206 ~ 13755469 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttaattaacacacatcaatccttcattaaaaaaaaagtgataagtaaataagagaaaatatacataatcaCAGTGTTATTACAAAGCAAAGTGAAGTTAAATCAAATTTCCatcagtgatatatatattttttttcagtattcctctctctctctctctctttcatttgctttaacaatataaacaattacaaattgtCCGTAAATTGGTTTTGCATTGAGACTCATAATTACTGTACATGTTACTTTTGGTCACTAGCGCTTTTATGTTCAACACCTGGACTGAAAAATCCTGAGCCATAGGTGTAATCCAGGACAGTGGTGATTACATTAAAGGGTGATAAGAGGACATGCCAATGGTCAAGCAGAAGACCCTTTCTTCAAAAGAAGGTTCTAGCAGGAGCTAagaatgcaggaaaaaaaagtctccCTTAGAAACCCTGCCAGCGAGTCAGTACGTTTCTATCAATGCCAAACCATCTGAGGCAcgtgtgtttttcttatgaCGAAGCTTACCAGGCATGATTGCTAGAAACCAGCGAAAGAGCTTATGCACCCTGGAAAAGATTACCCtccccccaaataaaaaaacacattgaaaaattCTTACTCCTTACTCCATCccagtatttcaaaataaaatagcaaaatCTTTATCATCAAGACAAGGCTATCAGAAACACATGGCTATTTCTACCGCATATCTCTCTTCCCTCCATCTGCTAACACGTCAGGTCAGATCTGAGAAGGAAGAATGGGTCACAAACACTCCCACTGCAAGCTAAGTGAGAACACTTGAGGCATGATGGGACAATGTCACACTAGGTCAGTATCTACACTTTCTTACCAATTGTTTCAGCCACTTCCTGTGCACGCGCAGTGCACCACTTTTACTGGAACAAATGCTACAGTCCTACAATGCAATGGTGCTTGACAACAATGGAAATGAGAAGGTAAAATGTTCAGCACTGTTGGACAGTCAatctagcttttttttttttttttttttaagtgactgaaatatatttgaactTAATCTAAATAACACCATTATTTACCAGCCTGCGTTTCTGTGCATATGACAATATCAGCAAAAACCTCACAGGAATCCAAAGTATATCTTAACACATTATCGACAGAAATTATCCACCATCACATTCAAGGTTTGTACAAACAAGCCAAACCCCTCAAAAAGAGATAATGGCAAcgcaacaaaacacacaacccaaTGAAGTCAGATTTCCATTGGCGAATGAATTAGAGTAACATTTTGTAGCCATTATCTACCAAGTCCAAAGGCAATAACATTGCAGTCTGGGATCGCTCTCAGTTgagtgtgacattttaaaagttttgtgGGGGGAGAGGTATTGAATTTGATTACAAAATGGCCTCTGTCACACCTCAAAATAGAGACTGCTGTAGTTGCTTGACAACAGGCAGTGTCCTTgagctatttattattttttttaataatttctgaCCAAGTATGAGAAATTGCCCTCAGTCACCAGCTCAGACATCTGCATAAAGGTCTTCAAAGTGATGGAGAGCAGAAAGCTAGAAGAACCTTCTAGAACGAGCTGGACCCCTCACACTGAACCAGGCTCTTGGAATTTAATGGCACAAATCAGAAAGGCCTAAAGGAACACTCAGAGTCAGAGAGCATGTAACCACTCTCCTGTCTTACTGCCAATTCTCTGGTTTTCACATTTTTCCCTTGCCTTTCTTTGTCGGAAtcaaatggcttttttttttatataataataataaaaaagggtcacattattccatttaatGTCccagatatacattttatttttcctttagggGATTTCCAAACTACTACCGAGAAATGTAGTTGCTCGGCTTCTTCGCAAATGGCCTCAATCGCATGTGATAGTGCAGCTTTTAAATAAGGCACAGTTACTAAAGTCTAAGgtctaaagaaacaaaataaaattcccCTTCAACAAAGCAATGTTAGGCTTTACACAGTCACCCACAAAATGGAGCGTGGGATCTGCAGGATGTTTTGTGGGCAGTGCACTATGGCAGCCAGAGTCTTTCTTGTAGTGGGAGCTGGTGATGAAAATCAGGTGTTTTCCAAGACCTGATAATACCTTTAAATTTTCCTCAAGTTACATCTATCAAGCATAGAAACAAATCTGGAAAGTGCAAGGAGCAGAATGTCAAGCAAAGAAACATTGGGCTAAAGGCTCAATGTACCTAGAACTGGAAGTAAATTACAGcacattcagttcaattcaaggAACCTTAGTTGTGAGTCCAGGCAATTAAGTTGTGCTCTGTGGgggacacacaaaacacaggcaTTACCagataaagaaaatcaaacctGTTCTACACTTCACCTCAAAGCAGAACCCTCTCCAACACAGAAACCACAGTTCTTGCAATCTCTAAATTCATTTTTACTTCAATTTAAACATGGCTTTCAGATCATAATGCTACTCAAAAGATGATGTTAACTCACATCCCTGTCTCCATCCCACTTACCACTGcctattttctttaatgtaagAAGCATGTGTgcgatttaaaaaacaaattgcatagGGGCTTTAGGTATAGTAGATGAAGCGGTCAATCATATGAGCCTTATATTATAAGCATAAACAGGCCCAGGAGGAATATTGTCATGAACTCTAGACCAAGAGTAACTTAGATTGGCCATTGCGTGTAAaggtaataatacaaaaaattaaatttaaaaaacaaaaacaaaaacaaaaaatcattcaaaaacagtaaCAATCAATACTTCAGAACAAGCACTTGGTCAGTGCTGTGGAGTAGCCTTCTGCTCCTGGGATATTCCTAACAAAGAATCTGAGTATTTTCAGTTCTTCTTCTTTCCTCAATGGTGTCCCACATGGTTGAGTTCGAGGGAATACACACCTCATGATGACCGCTGGGCCCAACTTCATATCCCAGGGCTCTGCATATCAAACAAGCCTGCGCTCCACTGTACAGAAAGAACAGCAGGACAGAGCGATTCTGCTCAGCAGTTTTAGGGTTTTGCCAAATGGGCGGAATGATGTGAACAGACTCATGGGAGTTCTTCAGTTTGTTCGTTTGTCTGGACTGCAAAAGCATACGCTTTCCTTATAAGGgtgttgtcttttctttttttctctgtgtggttTTTGTCCATTTGCGTAGACTTCAAAAGCAGCAGATAGTTTGTGACGTTTAAtactgtagtagtagtagtagtagtagtagtagtaatccATCCTGGAGTCTCTCCTCCGGGTGTCTGGAGTTAGCAGGACTTTTCCTTAGAGGAGGCCATTTCTCCGCTGTCCCCCAGCGTAGCAGGGGGAGCATCCTTGGCCGAGGGGCTGTCTGCGGGGCTCTTCTCGGGTGAGGCTGCTATGCTGGGCTTGGCGTCGTCAGGGGTGTGCTCATTGGGGATGAGGGGTGCCGTGGTTTAGTATTCTGTGGGTCTGGGTTGTTGGTCTTAGCGGGAGGAACTGGGACCGGAGGGTTGGAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105813 lncRNA downstream 1087887 12663009 ~ 12663319 (-) True G84822
TU105803 lncRNA downstream 1247704 12500240 ~ 12503502 (-) True G84812
TU105774 lncRNA downstream 1548379 12198777 ~ 12202827 (-) True G84785
TU105763 lncRNA downstream 1607843 12141960 ~ 12143363 (-) True G84780
TU105760 lncRNA downstream 1618049 12131302 ~ 12133157 (-) True G84778
TU106057 lncRNA upstream 81118 13836587 ~ 13837073 (-) True G85009
TU106060 lncRNA upstream 102835 13858304 ~ 13862544 (-) True G85012
TU106061 lncRNA upstream 102835 13858304 ~ 13862472 (-) False G85012
TU106062 lncRNA upstream 104819 13860288 ~ 13862472 (-) False G85012
TU106104 lncRNA upstream 174373 13929842 ~ 13930281 (-) True G85044
AMCG00021287 mRNA downstream 26558 13717973 ~ 13724648 (-) True AMCG00021287
AMCG00021291 mRNA downstream 37212 13705861 ~ 13713994 (-) True AMCG00021291
AMCG00021286 mRNA downstream 60034 13680903 ~ 13691172 (-) True AMCG00021286
AMCG00021289 mRNA downstream 72131 13677782 ~ 13679075 (-) True AMCG00021289
AMCG00021278 mRNA downstream 128594 13612442 ~ 13622612 (-) True AMCG00021278
AMCG00021285 mRNA upstream 226 13755695 ~ 13771411 (-) True AMCG00021285
AMCG00021288 mRNA upstream 19570 13775039 ~ 13787257 (-) True AMCG00021288
AMCG00021284 mRNA upstream 125671 13881140 ~ 13896275 (-) True AMCG00021284
AMCG00021290 mRNA upstream 141424 13896893 ~ 13924592 (-) True AMCG00021290
AMCG00021301 mRNA upstream 175367 13930836 ~ 13938158 (-) True AMCG00021301
TU105989 other downstream 123459 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 949620 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1223512 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 7204629 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 8999971 4748781 ~ 4751235 (-) False G83761
TU106093 other upstream 114470 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 294505 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2485535 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2891670 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2891670 16647139 ~ 16649825 (-) True AMCG00021412

Expression Profile