RNA id: TU106061


Basic Information

Item Value
RNA id TU106061
length 4169
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G85012
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13858304 ~ 13862544 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacgcatgaaagaaaataaaataatcataaacataataataatcataatcataataatcataataataagtacTCCAAGAGCTAAAGCTTATCTTTTATAAATTAGAAACCAAAAGTTCAAATATGTACACAGTATTTGACCATTTCTGATACACTTTGCCCAGTTCAACATCAAACAGAGACTGTACATTTGGCCAGGCGGGAAATACCAAAACAGAGATGTGAGCCACCTGATAACAAGAGAAATGAGAGACTGAGCAATACACAATGTCTTTGATAGTTTTGTAATATACTATTACTGGTCAGACAGTAGGTGGGTGCAGGTCTTCCATAGTTCTTGAACACTTTATACTGTggcatacatattttacaggcTATAGGAGTATACACTGAATTACAGTGATCGAGCAGGGCTGGTCCGTCTTAACTAGGGAAGCCCTCAGCCTTCTGTAATTTTTTCAGGGCACCCAATCTGGTTAACTTGTGGATGGCTGAGCTATAGATAAATGGGCAGTTACAGCTATAAGATTTTGATGGAAAATGAGTGCTGAGACCATACTGGACatgctgtataaataaaatcGAATGTGTAACATGCACTTCTTTTCGTTGTCATTCTCAAGACAAATACCCGTGGCGTTAttgaaacaaactaacaaaataacaaaaactgaTAAGAAGCCTTTCATAGTGGATTTTCAGAGTTGCGGCTTCACCCAAGCTCCCAAAAAACAACTTGGCACCAGCAAGATGGTTTTCTTTCTCGAGGCTGATGCGTCATTAAGAGACAGCGACCCATGCTTCCGGTGCCGTTTCTGACTATTTGTTTTGCCAGTAGCCCACCtgctccccccgcccccctcctcGTGTTAACTCAAATCATGCAGACTTTTTACTCCCACCCCTTACATCCCCAGCCAAATGCACATTATCACAAGTGAATAAgagcaaatacataaattataaattcTTCAAACATACCAGTGAAACAAGTTAGCAAGTGCATAGGAACAAGATTACTCAGGCCTTGtgacttaatttaaaaagagagaacagAAATCGCTTTCTCTGATGTAAGCTCTGCTGGAAAGGCCATTAAGAAAATTCTGGAGCTTTCCGCTAAAATGTATTGGTTTACCATTTCAATTTTGAGTTTGTATGACGTAAGGCCCATTCATCAGATTTTTAGGAAATTGCAGAGTGCGTAGCACAGTAGTACGTATAAGTGTTAATGTATGCACCACGTAACCTGCAGTAGAGCATTTCTGAACCCCTATACAAAAGATACAGCTTTCGCCACTGTACACAGAGAGCCATGAAAACCAGCTTTGGGCAACTAGCTGAGAAACAGGAACAGTtgtcattaaaaacaggaaaaccacTATATACGAGGagaatcttaaaaacaaaacaaaaagtttttcCAGCAGCATAATGGAATTGCAAATGTGCAGCCTCACAGTTCCATACAGTAAAGTCTTGAAGCAAAAGCAGGGAATGGTACATTGAGATGTGCTGTGTCCTCAAAACTGGGCCACTGAGGTGAATTGGGACAATGTGTGCTTTGGGTTTTGGGATATTtggtttcagattgtgactttttttttgttctcattCAAGAGAATTTGTCCCCAAGTTGAACTAATACTGATGGGGACAGAAAACTCAGGAACAAGCTGAAGCCCAGCTCTCGGCTCTCGTGTCTGCCGGCTCTGGAGAAACGTGCCCTTCTTTTACTTCAAGTCCCTTGGATGGACGGTACGGCTGATACAGACAGCGAGATACATTCATGAAGCAGAGTGTGGATACAGACGCTGCTCAGCACCTTAACACACAGTCCCAACACAGTCAGGGTCATGCCTGACCACTCCTCACAGTTTTACACCTCATCTTTGTGCGGTCGACCCCTCaagaaccccccaccccccaccccatcccctctccttcctccaccCGCTGTTCCATTTGTCATTCAGATGGAAGGGCACTGTAGAACGCaaccctcctctctccccctgacAATATCCTTACCCAGATACCCAAGGCAGCCCTTATAACTCTTTATTACAGCGGGATATTAATCAAACCAACCCAAATCATTTGGGAATGGATGAAAGAATAACAGTCGGAAACTAAAATTATTAGTATTCACTGTGCCttaaatttaatacatttttaatcaaggTGAGCCAGGCGGGGAACATTATCTACATTGGTACGTCTGTATCTTATTAAAGGATGTTCCTGCAGGCAGCCAGAGGTGTTTgaaaaaacacagctttttattttaattaaaaatgggcagggagaaaaaagaaataaagattgGATACGGTACGGTCTGCATTTTAGCTCAAATGTTCtcgcctttttttttcttttttttttttacaaaaatatatatatatttttaatctctgtGATTGAACTTCTAAATAACATTACAAGCAGATCCacttatatatagttatatagatTTGGATCGCAATCAGTCACACTTGGCTGAAACTAAGGGGCATGTGCAAAATACTGAAATCGAATTCACTAAAGCCTCCAGTATCTGAATGCTCCTTATGATTGCCTTAAAGACCACTCATTTTCCTATGCTGCCTCAGTATTGCAAGTTATATGAAGTTTGAGATTTGTTCCAATGCTGCAAATCACTCCAGTCCACACTACCTGAAGGTATTCTTTAAGGGCATAATCTGTACTGCGAAACCCACAAAGCTAAAAGGCGACCGTACCCTATGGTGGCATTACAGTGGTTAGCAAGTATGTGGGCACGAAGCAAGAGGTGCATACATAGGTAGGGAGATATACActctatagatatatacacatatataagtagtactttaaataaatgaacataatAGAGACAGCTCTGGTGTAGGCTTCTAACACAGCAccctgagaaaaacaaaacaaattccagTATGATGTAAAGGCATAGCGTCCCATCAATCAAAGGTCTCAGTCCGTTACCCCGAGTGTAACAGAAGTCTGATGCCAGTCGGTCAGAGAGCAGACAGTGCAGCGAGGGCAGGCCTTAGGGCTAGGTCACTTATATATTGAACTGTCAAGTAAATGTGTAGGAGGATTTTTGGTCTAATTTCTTAAAATGCTGGCTtccttcattcatttttaaattttatttttatttccttgtgattaagattttaaaaatccaACATGGCAGCATCTGAGACTGTAAATGGAGGTAATCTGtctgtttcttaaaaaaataaaagaaattgGCAGCATTTTTCAGTAAATCATGATTTGGCACTTCATTAAAGTAGAGAGGGAGTCTGTCAACAACACAGACAGTGCTGGCAGGTTAACATTTTAGGGTGGTGTTGAATCTGCGaatacatgtattatacatTGTAAAGGAGTAGGTGGATTTCTCATTTCGGTTTTGAAACAAATTCAGAATGAACTGGTCTCAGGTTCATGCTTACTAATAGTTCTCAGATTCAGTTTTACAACCGGCCAGGGTCAGAGCTAATCTGACTGAACCATCTGTGGTAGAGAGTGTGTTTAATATTCAACATAGAACCAAGTGAtgatgaatgaaaataaaaaaacaaaaagccccACACATTtctgacccccccacccccccaaacccCACCCCGCCCCCTCCTACTCCTAAAGCCACAAAGAGCGACATGGCAATGGAATAAATGACCGGAATCACCTTTAATTCGAGAACGGGAATACCACACCTTCTAGAAGTGTCTGACGCTTTAGGACTAAAACTGATTGGACCAGGCTCTCTCGCGGGCCACACGTCATGCAAGGTGTGTGACTCTGGGGAGAGAGGGCAACGAAAGGGTTCTAGAAgcaagaaaacacagagagagaatcTGGTAATTTGGgtgcccctccccctcccaacccccacccccattcaCAGAGCTGGGGGAGTTGGCTTGTCCTTTTGGGCAGACGAAGAGTTGCTTGAGAAAACTGTGAGGCGCTGTTTAGGGCACCCCTCTTCAGGCTGGGCTAGCCGAGGCCCCCAATCGCAAAGGCCCCCCAAGGCAAAAGGAAGAGCATAGAAATCAGGATCTGGGGGAGGGCGTTCTCGGCAGTGCCTgcaagaaaggggaaaaagaaGAGTGAGCCCAGACTGtgcccaacccccacccccgccaTGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106057 lncRNA downstream 21231 13836587 ~ 13837073 (-) True G85009
TU106048 lncRNA downstream 102835 13751206 ~ 13755469 (-) True G85003
TU105813 lncRNA downstream 1194985 12663009 ~ 12663319 (-) True G84822
TU105803 lncRNA downstream 1354802 12500240 ~ 12503502 (-) True G84812
TU105774 lncRNA downstream 1655477 12198777 ~ 12202827 (-) True G84785
TU106104 lncRNA upstream 67370 13929842 ~ 13930281 (-) True G85044
TU106113 lncRNA upstream 85835 13948307 ~ 13949820 (-) True AMCG00021302
TU106124 lncRNA upstream 103464 13965936 ~ 13966910 (-) True G85058
TU106125 lncRNA upstream 105663 13968135 ~ 13968382 (-) True G85059
TU106161 lncRNA upstream 167218 14029690 ~ 14034000 (-) True G85089
AMCG00021288 mRNA downstream 71047 13775039 ~ 13787257 (-) True AMCG00021288
AMCG00021285 mRNA downstream 86893 13755695 ~ 13771411 (-) True AMCG00021285
AMCG00021287 mRNA downstream 133656 13717973 ~ 13724648 (-) True AMCG00021287
AMCG00021291 mRNA downstream 144310 13705861 ~ 13713994 (-) True AMCG00021291
AMCG00021286 mRNA downstream 167132 13680903 ~ 13691172 (-) True AMCG00021286
AMCG00021284 mRNA upstream 18668 13881140 ~ 13896275 (-) True AMCG00021284
AMCG00021290 mRNA upstream 34421 13896893 ~ 13924592 (-) True AMCG00021290
AMCG00021301 mRNA upstream 68364 13930836 ~ 13938158 (-) True AMCG00021301
AMCG00021302 mRNA upstream 86480 13948952 ~ 13951044 (-) False AMCG00021302
AMCG00021299 mRNA upstream 91579 13954051 ~ 13964211 (-) True AMCG00021299
TU105989 other downstream 230557 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1056718 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1330610 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 7311727 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 9107069 4748781 ~ 4751235 (-) False G83761
TU106093 other upstream 7467 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 187502 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2378532 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2784667 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2784667 16647139 ~ 16649825 (-) True AMCG00021412

Expression Profile