RNA id: TU106071


Basic Information

Item Value
RNA id TU106071
length 3040
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G85019
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13896919 ~ 13899981 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaaaaaggaaatttaaaaacagcaagTGTGCAAGTGAATTCTTAACATACATTACAAGAGAtccataaaagaaaaacaacaaaatacaaaatgccttCAGGGCTGCTAAAAACAATCAGTATGGAGAAATCTCCCAAAAGAGTTGTCCAAGGTAATTCAGAGTTCTGTCAAGTCAGAGAGGACTACACTGTACCTATACAGTAAGACCCTGTAGTTTGGTAAACACATGGATTGCATTTCTTCATAACTGTAACAGGTAGAACTGCATCTGCAGGCTATACTTCCTTGTACAGCCAAAGGTTACCAGTGGGAAGGTTACCAGTCATGGAAAGGAAAGTGAAAGGAAATTGGATTAAAGGCTCCTGCTTTGATTTTCACAACCACTAACGTATGGACAGTAAGCACTGGACACTCCTGTGTGATGCCAAAGTAAGGTATAGACTAGTGTTGTCCGAGTACAACTAATGTACAGGAGAGGTAGTGTATGAGAGAATGGGAGGAGATTTACCCATGTTGATTTATGGAGCGTGAGACTTTGGAAAAGGTAGGTTAGGAATAAAAAGCTGGAGTACACTTAATTTCTCTAGGATGAGGGCAAGGAAGTCTGGCGAGGGAGATTATTATgggatggtgtttttttaacacacaatgCGGAAAtaatttagtgttttgttttctattagaGATTGGCATGGTCGGCTGATTTCCTCAGACTGATGCATGTGGAAAAAGGAGTGCTAAACTGCTGGCAAGACAACCAATGATGACTGACAATGTTTGGTTTGCAAGCAAGAGAGACGTTTGACTGAACATGGCCGATACTCCAACCTCAAACCAACAGGAAATGTTAGGCTTCAGTACAAATTGACAAAAAACTGTAGCAGAAGCACATTCCAACTCAGAGCTATCTTAGGAAATATCTGTGTTAAAGGGCAGTGTTTTAAAGAGAACAAATGCACATATAGCATTCTACTGTAGCCTCTTCTAACTTTAACATTACCAACATAGCTTCATGCATATTCAGCTGCCGATACAATACTCTTGGTCAAACAGCACACCGGCGGCCGTTTTCATCGCAGTCCTGGGAATgtagttcatttaaaagctttAGGAAAACAGGCACTATGATCGCAACAGTGATTTCATTCATCTTTCTATAGACTTTCCTCTACAGGCTCAAGATtattagcttttattttatcaggatttgatCTTTTCACACTGGTGACAGTGCACAGTAAAGCCCACACATTAGCCTACCATAGCCCACTTGTATTTCCCATATCTGACACACAAGCTTGTTGAGTAGCATTTGAAGTCTTCTTTTGGGTGGAACCAGGAAAAGGCATTAAAAACGAACACACgtaaacaaataatttttctttttttccttagGTAGTCTTTAACGTACCATTTATATGACACACAACCCTAAGGATAAATACAGACATTATTGGGTGATTAACAGCACAATTTTACATCACACAGAAGGACAATGGAGACAGCAGCACTATGTACAACAGAGCTTAAGACTTCAGGGCCGCGTGGCATGCCGCTTTGCTTTTAGTGTGCATTTCTGAAGGAAAAGAACGGCCTGCTAATGCAAAAGAGAGACAGCATGTGTAAACTGAAGGGGAGAGCACTCTCATGTGGATTGATAAACAATGCCCAGGTTTACAAGAGGGAAGGTGATTGTGGGAGGCTGCAGAGTGATGCAATGGAGGTCCAAACAAATGCATCAGTTAACAGGACAATGtaagaaaacacattacagaCTTCACACCTCATGAGGGTAAGGACTGGTTGGATTGTTTCAACAACTGTGCGCTGCAGCAAGCAACTGAAGTGAATGAGTTCTTTCTAAGTCCTTCAGCTCCCAGGTTGCCACATCAGAGTCCATATTTCAGCaatgcagaagaaaacaaaatgatgccCACACAGCCAGCATGAaaggtgaaatgtattttatccaCTTCCACCTGAAGCAAAGactactttaaatatatatacatatatataaatgtatatttataattacataatacaataatgccAGCAGATTTCCCCCACTTCATACTCTGGTATTATTTAAATCGATTTCCATGTGACCTTCCTTGAAATGCTGTGGCTCAGTATGTGGCCGATTGTCTGAATAATCCCATAGTGCTCATAGACTTCATTCCAAAATCAGCCCGACTGATGACCCTGTCCCAATGACAACTCCCATCTGCAAAGGCCATGTTTCTGGTATCAAGTCCATCCAAGAAAGAGAACTCATGTGTTCTGTGCCTCGAACACAGACGAGCAGCATAAAATCAACAGTGTAGATGGCATGTTTTAGTGTAATATATTCTTCCATTTCTTCTTGGAGGCCTAATATATAAAGTCAGACTTACCAGAATATGCAGAGATTTTGGCACAGGAGACCCAACTTCCAACCCTACATGGAGCTGGGGAGGAGGGTTTTATATAGATGGCCAGGGGGAGAAAGGAATTCAAGTGTCAAGGCTTTGTGGTTTTCAAAGccagccaaaaataaataaaatgacaaaggCATTGATTTTAAACCTTTATAAACAGCCACAAGCTCCTGAATGTTAAATAGTGCCTTGGGTTCAGAAAGGGTTAAAAGGGTAAGAGAGGCTAGAGTAGGAATCCCTGACAGTGATGGCTTTGCTGTTGAGTGAGATGGGGAAACAGGAGGTTATGTCTGCATGGTCCAAAGATGGCTGTCTTGGGGTGTCTGCCTGGCGGATCTACACTATCTCACATTCTCTGTGGGTCTATGTATGGTGGCCCACACTAGATCAAGAAATTTGCAAGTGCCAGGATGAGCAATCACAGTCCAAGCTCCCAGTACCTTTTCTGTCACGCAATAGCTTGGGATGATCCCTGAACCCCCCCGAAGGTGGTCCTCACTCTTCATCCCCACCCATGAGGAACCCCAGGATGAAGTCTGTGGCTCTCTGACGGTCCTGTTGATTCTGTCTGCCGATTAGGTTGGGCGGGGGCCTGATCAGAAGGGTGCCGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106054 lncRNA upstream 34421 13861670 ~ 13862498 (+) True G85006
TU106002 lncRNA upstream 211674 13680937 ~ 13685245 (+) True G84962
TU105971 lncRNA upstream 292760 13603858 ~ 13604159 (+) True G84938
TU105969 lncRNA upstream 294991 13600205 ~ 13601928 (+) True G84936
TU105947 lncRNA upstream 324472 13571771 ~ 13572447 (+) True G84923
TU106122 lncRNA downstream 63128 13963109 ~ 13964224 (+) True G85056
TU106138 lncRNA downstream 100615 14000596 ~ 14002419 (+) True G85069
TU106156 lncRNA downstream 116152 14016133 ~ 14018941 (+) False AMCG00021296
TU106162 lncRNA downstream 134234 14034215 ~ 14035662 (+) True G85090
TU106172 lncRNA downstream 169404 14069385 ~ 14073125 (+) True AMCG00021292
AMCG00021281 mRNA upstream 46462 13848232 ~ 13850457 (+) True AMCG00021281
AMCG00021280 mRNA upstream 144770 13731696 ~ 13752149 (+) True AMCG00021280
AMCG00021279 mRNA upstream 192829 13693368 ~ 13704090 (+) True AMCG00021279
AMCG00021275 mRNA upstream 234450 13650263 ~ 13662469 (+) True AMCG00021275
AMCG00021276 mRNA upstream 266449 13622849 ~ 13630470 (+) True AMCG00021276
AMCG00021282 mRNA downstream 42006 13941987 ~ 13947771 (+) True AMCG00021282
AMCG00021283 mRNA downstream 48501 13948482 ~ 13982728 (+) True AMCG00021283
AMCG00021297 mRNA downstream 87143 13987124 ~ 13996608 (+) True AMCG00021297
AMCG00021296 mRNA downstream 116152 14016133 ~ 14033557 (+) True AMCG00021296
AMCG00021294 mRNA downstream 141459 14041440 ~ 14047801 (+) True AMCG00021294
TU105723 other upstream 1796212 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 2909745 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4473500 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 5263509 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6775682 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2163619 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 2690200 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 2756663 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 2756663 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 3097896 16997877 ~ 17004131 (+) True G85869

Expression Profile