RNA id: TU106104


Basic Information

Item Value
RNA id TU106104
length 440
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G85044
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13929842 ~ 13930281 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTGTCATGGAAAAATCATTCCATTATATGCCTAAGTGCACCCACCACAGGGACTAAAAAGGAAGTTTATGGAAGTCAGAGACCAACATACTAATTACAGTACCATTGCAGGAGAAATATAATCTTCACACAGTCCATTAGCTAACTAaaacatatacaccgatcagccaaaacattatgaccacctgcctaatattgtgtaggtcccccttttgccgccaaaacagccctgacccgtcgaggcatggactccactagacctctgaaggtgtgctgtggtatctggcaccaagacgttagcagcagatcctttaagtcctgtaagttgcgaggtggggcctcaaTGGATCCTAcctgtttgtccagcacatcccacagatgctcgattggattgatatctggggaatttggagtcaacaccttgaacttgtgattcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106060 lncRNA downstream 67298 13858304 ~ 13862544 (-) True G85012
TU106061 lncRNA downstream 67370 13858304 ~ 13862472 (-) False G85012
TU106062 lncRNA downstream 67370 13860288 ~ 13862472 (-) False G85012
TU106057 lncRNA downstream 92769 13836587 ~ 13837073 (-) True G85009
TU106048 lncRNA downstream 174373 13751206 ~ 13755469 (-) True G85003
TU106113 lncRNA upstream 18026 13948307 ~ 13949820 (-) True AMCG00021302
TU106124 lncRNA upstream 35655 13965936 ~ 13966910 (-) True G85058
TU106125 lncRNA upstream 37854 13968135 ~ 13968382 (-) True G85059
TU106161 lncRNA upstream 99409 14029690 ~ 14034000 (-) True G85089
TU106163 lncRNA upstream 103943 14034224 ~ 14036645 (-) True G85091
AMCG00021290 mRNA downstream 5250 13896893 ~ 13924592 (-) True AMCG00021290
AMCG00021284 mRNA downstream 33567 13881140 ~ 13896275 (-) True AMCG00021284
AMCG00021288 mRNA downstream 142585 13775039 ~ 13787257 (-) True AMCG00021288
AMCG00021285 mRNA downstream 158431 13755695 ~ 13771411 (-) True AMCG00021285
AMCG00021287 mRNA downstream 205194 13717973 ~ 13724648 (-) True AMCG00021287
AMCG00021301 mRNA upstream 555 13930836 ~ 13938158 (-) True AMCG00021301
AMCG00021302 mRNA upstream 18671 13948952 ~ 13951044 (-) False AMCG00021302
AMCG00021299 mRNA upstream 23770 13954051 ~ 13964211 (-) True AMCG00021299
AMCG00021300 mRNA upstream 70315 14000596 ~ 14013160 (-) True AMCG00021300
AMCG00021298 mRNA upstream 106952 14037233 ~ 14040889 (-) True AMCG00021298
TU106093 other downstream 11974 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 302095 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1128256 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1402148 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 7383265 6544492 ~ 6546577 (-) True G83864
TU106219 other upstream 119693 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2310723 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2716858 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2716858 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 3368599 17298880 ~ 17303470 (-) False AMCG00021435

Expression Profile