RNA id: TU106124


Basic Information

Item Value
RNA id TU106124
length 975
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G85058
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13965936 ~ 13966910 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGAGTGTTATTGTTGTACTTTAATAATTTGAATCTCCAGTCTGAAGAGGAACACATTATCAAACTTGTGCAGGGCTGCCTGGAGGTGAAGCTGGGTTCTTCACATGTTCCGTGGTCAGGTCCATGAAAACCACTGCAGGTTCCTCTCAGTGTTTCTGTTCACTTTGTGTAattattctgtgtgtttgtatgtgtgtggagAGGGAGAGCTGATGTTCTTCACTATTGATGTTCTGAAGTCTCTTGatgactgtctgtctctctctgtatgacTATCTCTTTCAACATTTCGCTGTTCTGAAGATGTCCTGCTCCTTTGAGGTGAGGACCCTGCACTCGTGAGGTGGTGTGAAGACTGGGGATGCTGAGGTGCACAGGGCCTTGCGGTCTTTGATTTGTAGGAATGAAGTGAGGTGTCACCTTCTTCACTAGCAGCCCAGGCCAATCCACACTCTGACACGAGAGTGTAGAAAAGAAGGACAAGGTGGTGCCACCTTCACTGTGACTGAAAAACAGTTGTGTGCGCCACGTACTCTGAAGAAGGGATGCGTCTTCACGTCTTCTGCTTCGCGTTCCCTGGCCCCAAGGTGCCATTCTGGATCTTTCTCCAACAGCTGCATGATTCAAAACAAGAAGGAGCGTGCACTTTCTTTTCCATTAATAGACTTTGTTGAAACATGATGTTAGAGAGAAGACCTCGTAGTTCGAAGTGCAAATGAGCGTGTGTGCCCTGTTCTTGTAAAATTAATTCCACTGCTACACAGTCACTGGGTCTTTCTCCAATTCCATAACATTTCAGTAACAGTGACATCCATTCATTATGGTTGGTAAGCAGGATACCGAGGGACAAACTGAAGGCAAAAACTCGTCACATGAAAAAACAACCCTGGCATACAGACCCCTGTGATGACAGAGACTGCTTCTGTGGACAAGGACTGGGGGAATGGTAATGTGTTGTTAATGATACTTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106113 lncRNA downstream 16116 13948307 ~ 13949820 (-) True AMCG00021302
TU106104 lncRNA downstream 35655 13929842 ~ 13930281 (-) True G85044
TU106060 lncRNA downstream 103392 13858304 ~ 13862544 (-) True G85012
TU106061 lncRNA downstream 103464 13858304 ~ 13862472 (-) False G85012
TU106062 lncRNA downstream 103464 13860288 ~ 13862472 (-) False G85012
TU106125 lncRNA upstream 1225 13968135 ~ 13968382 (-) True G85059
TU106161 lncRNA upstream 62780 14029690 ~ 14034000 (-) True G85089
TU106163 lncRNA upstream 67314 14034224 ~ 14036645 (-) True G85091
TU106209 lncRNA upstream 91010 14057920 ~ 14062793 (-) False AMCG00021304
TU106213 lncRNA upstream 91010 14057920 ~ 14071206 (-) True AMCG00021304
AMCG00021299 mRNA downstream 1725 13954051 ~ 13964211 (-) True AMCG00021299
AMCG00021302 mRNA downstream 14892 13948952 ~ 13951044 (-) False AMCG00021302
AMCG00021301 mRNA downstream 27778 13930836 ~ 13938158 (-) True AMCG00021301
AMCG00021290 mRNA downstream 41344 13896893 ~ 13924592 (-) True AMCG00021290
AMCG00021284 mRNA downstream 69661 13881140 ~ 13896275 (-) True AMCG00021284
AMCG00021300 mRNA upstream 33686 14000596 ~ 14013160 (-) True AMCG00021300
AMCG00021298 mRNA upstream 70323 14037233 ~ 14040889 (-) True AMCG00021298
AMCG00021303 mRNA upstream 79125 14046035 ~ 14047696 (-) True AMCG00021303
AMCG00021304 mRNA upstream 91008 14057918 ~ 14062793 (-) False AMCG00021304
AMCG00021311 mRNA upstream 99696 14066606 ~ 14073961 (-) True AMCG00021311
TU106093 other downstream 48068 13869939 ~ 13917868 (-) True G85037
TU105989 other downstream 338189 13627335 ~ 13627747 (-) True G84952
TU105842 other downstream 1164350 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 1438242 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 7419359 6544492 ~ 6546577 (-) True G83864
TU106219 other upstream 83064 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2274094 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 2680229 16647139 ~ 16649825 (-) False AMCG00021412
TU107077 other upstream 2680229 16647139 ~ 16649825 (-) True AMCG00021412
TU107277 other upstream 3331970 17298880 ~ 17303470 (-) False AMCG00021435

Expression Profile